adapted to peppercorn v0.6.1

Author: bad-ants-fleet

nuskell/enumeration.py

@@ -14,7 +14,7 @@
 from peppercornenumerator import Enumerator
 import peppercornenumerator.reactions as reactions
 
-from peppercornenumerator.condense import ReactionGraph
+from peppercornenumerator.condense import PepperCondensation
 
 
 class TestTubePeppercornIO(object):
@@ -154,7 +154,7 @@ def enumerator_to_testtube(self, enumerator):
         condensed = TestTubePeppercornIO.condensed
 
         if condensed:
-            enumCG = ReactionGraph(enumerator)
+            enumCG = PepperCondensation(enumerator)
             enumCG.condense()
             reactions = enumCG.condensed_reactions
         else:

tests/test_enumeration.py

@@ -2,7 +2,7 @@
 import unittest
 import argparse
 
-from peppercornenumerator import Enumerator, ReactionGraph
+from peppercornenumerator import Enumerator, PepperCondensation
 from peppercornenumerator.objects import PepperDomain, PepperComplex, PepperReaction, clear_memory
 
 import nuskell.enumeration as ne
@@ -89,7 +89,7 @@ def test_peppercorn_interface(self):
 
         ###########################
         # Get condensed output CRN
-        enumRG = ReactionGraph(enum)
+        enumRG = PepperCondensation(enum)
         reactions = enumRG.condensed_reactions
 
         self.assertEqual(len(reactions), 1)