From 0bbfd1b23e7da973eeafa03a3c930ee6b8c6924a Mon Sep 17 00:00:00 2001 From: David Orme Date: Fri, 11 Oct 2024 11:17:23 +0100 Subject: [PATCH 1/5] Try and group dependabot PRs --- .github/dependabot.yml | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) diff --git a/.github/dependabot.yml b/.github/dependabot.yml index a794feda8..2c5d355f6 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -11,6 +11,24 @@ updates: directory: "/" schedule: interval: "weekly" + groups: + # Bundle updates in the pyproject.toml [tool.poetry.dependencies] section + production-dependencies: + dependency-type: "production" + # Should bundle updates in the pyproject.toml [tool.poetry.groups.*] sections + # but leave the sphinx ecosystem alone + development-dependencies: + dependency-type: "development" + exclude-patterns: + - "sphinx*" + sphinx: + # Separately allow it to move sphinx updates within minor versions + applies-to: version-updates + patterns: + - "sphinx*" + update-types: + - "minor" + - "patch" - package-ecosystem: "github-actions" directory: "/" schedule: From a4dbdf35c398aa029ca6372789de879a3d1351d1 Mon Sep 17 00:00:00 2001 From: David Orme Date: Mon, 14 Oct 2024 13:33:44 +0100 Subject: [PATCH 2/5] Set more useful time on dependabot updates --- .github/dependabot.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.github/dependabot.yml b/.github/dependabot.yml index 2c5d355f6..360d639d7 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -11,6 +11,9 @@ updates: directory: "/" schedule: interval: "weekly" + day: "sunday" + time: "03:00" + timezone: "Europe/London" groups: # Bundle updates in the pyproject.toml [tool.poetry.dependencies] section production-dependencies: From 6fa7eb36356583648cb508146f07bdda6c63e9be Mon Sep 17 00:00:00 2001 From: David Orme Date: Mon, 14 Oct 2024 14:15:14 +0100 Subject: [PATCH 3/5] Fix duplicate update issue when building docs --- poetry.lock | 2939 ++++++++++++++------------- 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b/virtual_ecosystem/core/variables.py index 42e2975a4..69ed666da 100644 --- a/virtual_ecosystem/core/variables.py +++ b/virtual_ecosystem/core/variables.py @@ -198,7 +198,7 @@ def output_known_variables(output_file: Path) -> None: RUN_VARIABLES_REGISTRY[name] = var _collect_vars_required_for_init(models) - _collect_updated_by_vars(models) + _collect_updated_by_vars(models, check_unique_update=False) _collect_vars_required_for_update(models) vars = { @@ -310,11 +310,14 @@ def _collect_vars_populated_by_first_update( RUN_VARIABLES_REGISTRY[var] = KNOWN_VARIABLES[var] -def _collect_updated_by_vars(models: list[type[base_model.BaseModel]]) -> None: +def _collect_updated_by_vars( + models: list[type[base_model.BaseModel]], check_unique_update: bool = True +) -> None: """Verify that all variables updated by models are in the runtime registry. Args: models: The list of models to check. + check_unique_update: Fail on duplicate update. Raises: ValueError: If a variable required by a model is not in the known variables @@ -332,7 +335,7 @@ def _collect_updated_by_vars(models: list[type[base_model.BaseModel]]) -> None: f"Variable {var} required by {model.model_name} is not initialised" " by any model." ) - if len(RUN_VARIABLES_REGISTRY[var].updated_by): + if len(RUN_VARIABLES_REGISTRY[var].updated_by) and check_unique_update: LOGGER.warning( f"Variable {var} updated by {model.model_name} is already updated" f" by {RUN_VARIABLES_REGISTRY[var].updated_by}." From 0567e7694f8ad28c40884cf04e954ca9bd42271b Mon Sep 17 00:00:00 2001 From: David Orme Date: Mon, 14 Oct 2024 14:31:42 +0100 Subject: [PATCH 4/5] Fixed typo and test break --- tests/core/test_variables.py | 10 ++++++---- virtual_ecosystem/core/variables.py | 4 ++-- 2 files changed, 8 insertions(+), 6 deletions(-) diff --git a/tests/core/test_variables.py b/tests/core/test_variables.py index 09a30ab22..a2e0d55ca 100644 --- a/tests/core/test_variables.py +++ b/tests/core/test_variables.py @@ -165,7 +165,9 @@ def test_output_known_variables(known_variables, mocker, tmpdir): [], check_unique_initialisation=False ) variables._collect_vars_required_for_init.assert_called_once_with([]) - variables._collect_updated_by_vars.assert_called_once_with([]) + variables._collect_updated_by_vars.assert_called_once_with( + [], check_unique_update=False + ) variables._collect_vars_required_for_update.assert_called_once_with([]) assert path.exists() @@ -452,8 +454,8 @@ def test_to_camel_case(): def test_format_variables_list(): - """Test the _format_varriables_list function.""" - from virtual_ecosystem.core.variables import _format_varriables_list + """Test the _format_variables_list function.""" + from virtual_ecosystem.core.variables import _format_variables_list vars = { "var1": { @@ -495,7 +497,7 @@ def test_format_variables_list(): ============= ============= """ - assert _format_varriables_list(vars) == expected_output + assert _format_variables_list(vars) == expected_output def test_get_model_order(run_variables): diff --git a/virtual_ecosystem/core/variables.py b/virtual_ecosystem/core/variables.py index 69ed666da..75dcd5a06 100644 --- a/virtual_ecosystem/core/variables.py +++ b/virtual_ecosystem/core/variables.py @@ -206,10 +206,10 @@ def output_known_variables(output_file: Path) -> None: for var in sorted(KNOWN_VARIABLES.values(), key=lambda x: x.name) } - Path(output_file).with_suffix(".rst").write_text(_format_varriables_list(vars)) + Path(output_file).with_suffix(".rst").write_text(_format_variables_list(vars)) -def _format_varriables_list(vars: dict[str, dict]) -> str: +def _format_variables_list(vars: dict[str, dict]) -> str: """Format the variables list for the RST output. Args: From 2a0a35e0bbe5125cce4498abcdd0f3ef713bbac8 Mon Sep 17 00:00:00 2001 From: David Orme Date: Mon, 14 Oct 2024 15:28:16 +0100 Subject: [PATCH 5/5] Deprecated sphinx-rtd-theme setting --- docs/source/conf.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/conf.py b/docs/source/conf.py index a357613f9..45d8a215e 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -204,7 +204,7 @@ class MyReferenceStyle(AuthorYearReferenceStyle): html_theme_options = { "logo_only": False, - "display_version": True, + "version_selector": True, "prev_next_buttons_location": "top", "style_external_links": False, "style_nav_header_background": "grey",