diff --git a/README.md b/README.md index 1ba70b482..c0377af4f 100644 --- a/README.md +++ b/README.md @@ -31,13 +31,9 @@ The research is based at Imperial College London: ## Project Team -* Professor Robert Ewers -* Olivia Daniel -* Dr. Jaideep Joshi -* Dr. David Orme -* Dr. Vivienne Groner -* Dr. Jacob Cook -* Dr. Taran Rallings +The Virtual Ecosystem is being developed by a international team of researchers lead by +Professor Robert Ewers (Imperial College London). For more details, please see the [team +page](https://virtual-ecosystem.readthedocs.io/en/latest/project_team.html) on our website. The research team are supported by the Imperial College London [Research Software diff --git a/docs/source/_static/css/custom.css b/docs/source/_static/css/custom.css new file mode 100644 index 000000000..25eaaadae --- /dev/null +++ b/docs/source/_static/css/custom.css @@ -0,0 +1,5 @@ +img.team-photo { + float: left; + width: 60px; + padding-right: 10px +} \ No newline at end of file diff --git a/docs/source/_static/images/people/anna_rallings.png b/docs/source/_static/images/people/anna_rallings.png new file mode 100644 index 000000000..5a665e867 Binary files /dev/null and b/docs/source/_static/images/people/anna_rallings.png differ diff --git a/docs/source/_static/images/people/arne_scheire.jpg b/docs/source/_static/images/people/arne_scheire.jpg new file mode 100644 index 000000000..4f1fb5c7c Binary files /dev/null and b/docs/source/_static/images/people/arne_scheire.jpg differ diff --git a/docs/source/_static/images/people/david_orme.jpeg b/docs/source/_static/images/people/david_orme.jpeg new file mode 100644 index 000000000..94b27b078 Binary files /dev/null and b/docs/source/_static/images/people/david_orme.jpeg differ diff --git a/docs/source/_static/images/people/hao_ran_lai.jpg b/docs/source/_static/images/people/hao_ran_lai.jpg new file mode 100644 index 000000000..c926a6287 Binary files /dev/null and b/docs/source/_static/images/people/hao_ran_lai.jpg differ diff --git a/docs/source/_static/images/people/jacob_cook.jpg b/docs/source/_static/images/people/jacob_cook.jpg new file mode 100644 index 000000000..6310a6a4a Binary files /dev/null and b/docs/source/_static/images/people/jacob_cook.jpg differ diff --git a/docs/source/_static/images/people/jaideep_joshi.png b/docs/source/_static/images/people/jaideep_joshi.png new file mode 100644 index 000000000..6c9099f24 Binary files /dev/null and b/docs/source/_static/images/people/jaideep_joshi.png differ diff --git a/docs/source/_static/images/people/lelavathy.jpg b/docs/source/_static/images/people/lelavathy.jpg new file mode 100644 index 000000000..eb8f4c130 Binary files /dev/null and b/docs/source/_static/images/people/lelavathy.jpg differ diff --git a/docs/source/_static/images/people/nick_tan.jpg b/docs/source/_static/images/people/nick_tan.jpg new file mode 100644 index 000000000..db1516df0 Binary files /dev/null and b/docs/source/_static/images/people/nick_tan.jpg differ diff --git a/docs/source/_static/images/people/olivia_daniel.png b/docs/source/_static/images/people/olivia_daniel.png new file mode 100644 index 000000000..ef1868e7d Binary files /dev/null and b/docs/source/_static/images/people/olivia_daniel.png differ diff --git a/docs/source/_static/images/people/photo_placeholder.png b/docs/source/_static/images/people/photo_placeholder.png new file mode 100644 index 000000000..02433cf2d Binary files /dev/null and b/docs/source/_static/images/people/photo_placeholder.png differ diff --git a/docs/source/_static/images/people/priyanga_amarasekare.png b/docs/source/_static/images/people/priyanga_amarasekare.png new file mode 100644 index 000000000..7e337eb9b Binary files /dev/null and b/docs/source/_static/images/people/priyanga_amarasekare.png differ diff --git a/docs/source/_static/images/people/rob_ewers.png b/docs/source/_static/images/people/rob_ewers.png new file mode 100644 index 000000000..0f8eb53e7 Binary files /dev/null and b/docs/source/_static/images/people/rob_ewers.png differ diff --git a/docs/source/_static/images/people/sally_matson.png b/docs/source/_static/images/people/sally_matson.png new file mode 100644 index 000000000..c93a01890 Binary files /dev/null and b/docs/source/_static/images/people/sally_matson.png differ diff --git a/docs/source/_static/images/people/sitinorbaizurah.png b/docs/source/_static/images/people/sitinorbaizurah.png new file mode 100644 index 000000000..683005e3f Binary files /dev/null and b/docs/source/_static/images/people/sitinorbaizurah.png differ diff --git a/docs/source/_static/images/people/taran_rallings.jpg b/docs/source/_static/images/people/taran_rallings.jpg new file mode 100644 index 000000000..5d5a77013 Binary files /dev/null and b/docs/source/_static/images/people/taran_rallings.jpg differ diff --git a/docs/source/_static/images/people/vivienne_groner.jpg b/docs/source/_static/images/people/vivienne_groner.jpg new file mode 100644 index 000000000..b60ed934b Binary files /dev/null and b/docs/source/_static/images/people/vivienne_groner.jpg differ diff --git a/docs/source/_toc.yaml b/docs/source/_toc.yaml index c0420cfa0..497fa0ef0 100644 --- a/docs/source/_toc.yaml +++ b/docs/source/_toc.yaml @@ -4,6 +4,8 @@ subtrees: maxdepth: 0 caption: The Virtual Ecosystem entries: + - file: project_team + title: The Project Team - file: virtual_ecosystem/theory/theory title: Theory entries: diff --git a/docs/source/conf.py b/docs/source/conf.py index f42dc9bda..26b574591 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -11,6 +11,7 @@ documentation root, use os.path.abspath to make it absolute, like shown here. """ +import datetime import sys import warnings from dataclasses import dataclass, field @@ -48,12 +49,11 @@ # -- Project information ----------------------------------------------------- +# Ideally the copyright would have a link to the team page, but neither an RST link, nor +# an HTML link works - they just get rendered as is. project = "Virtual Ecosystem" -copyright = ( - "2022, Rob Ewers, David Orme, Olivia Daniels, Jacob Cook, " - "Jaideep Joshi, Taran Rallings, Vivienne Groner" -) +copyright = f"{datetime.date.today().year}, The Virtual Ecosystem project team" author = ( "Rob Ewers, David Orme, Olivia Daniels, Jacob Cook, Jaideep Joshi, " "Taran Rallings, Vivienne Groner" @@ -239,6 +239,11 @@ class MyReferenceStyle(AuthorYearReferenceStyle): # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ["_static"] +# These paths are relative to html_static_path +html_css_files = [ + "css/custom.css", +] + html_sidebars = { "**": ["logo-text.html", "globaltoc.html", "localtoc.html", "searchbox.html"] } diff --git a/docs/source/index.md b/docs/source/index.md index 8b710702b..49316f2b0 100644 --- a/docs/source/index.md +++ b/docs/source/index.md @@ -73,14 +73,10 @@ The research is based at [Imperial College London](https://imperial.ac.uk): :::{grid-item-card} Project Team -- Professor Robert Ewers -- Olivia Daniel -- Dr. Jaideep Joshi -- Dr. David Orme -- Dr. Vivienne Groner -- Dr. Jacob Cook -- Dr. Taran Rallings -- Professor Priyanga Amarasekare +The project team is an international group of research scientists and software +developers, lead by [Professor Robert Ewers](https://profiles.imperial.ac.uk/r.ewers) +(Imperial College London). For more details, please see our [team +page](project_team.md). The research team are supported by the Imperial College London [Research Software Engineering](https://www.imperial.ac.uk/admin-services/ict/self-service/research-support/rcs/service-offering/research-software-engineering/) diff --git a/docs/source/project_team.md b/docs/source/project_team.md new file mode 100644 index 000000000..188a72687 --- /dev/null +++ b/docs/source/project_team.md @@ -0,0 +1,259 @@ +--- +jupytext: + formats: md:myst + text_representation: + extension: .md + format_name: myst + format_version: 0.13 + jupytext_version: 1.17.1 +kernelspec: + display_name: Python 3 + language: python + name: python3 +--- + +# Project Team + + + + +## Project leadership + +::::{grid} 1 1 2 2 + +:::{grid-item-card} Professor Robert Ewers +:margin: 2 2 0 0 +:link: https://profiles.imperial.ac.uk/r.ewers + +```{image} _static/images/people/rob_ewers.png +:alt: Professor Rob Ewers +:class: team-photo +``` + +Rob is a data scientist, specialising in biodiversity and whole-system ecology. He is +the project lead for the Stability of Altered Forest Ecosystems (SAFE) Project in Borneo +and principal investigator for the Virtual Ecosystem project. Rob is based at the +Silwood Park campus of Imperial Collge London. +::: + +:::{grid-item-card} Olivia Daniel +:margin: 2 2 0 0 +:link: project_team.html + +```{image} _static/images/people/olivia_daniel.png +:alt: Olivia Daniel +:class: team-photo +``` + +Olivia is the Project Manager and Administrator for the Virtual Ecosystem project. She +is a conservation scientist and is based at the Silwood Park campus of Imperial Collge +London. + +::: + +:::{grid-item-card} Anna Rallings +:margin: 2 2 0 0 +:link: project_team.html + +```{image} _static/images/people/anna_rallings.png +:alt: Anna Rallings +:class: team-photo +``` + +Anna is an environmental scientist with a focus on landscape management and applied +ecology. She supports the data science team in development of model parameterization. +Anna is based at the Silwood Park Campus of Imperial College London. +::: + +:::: + +## Code development and model science + +::::{grid} 1 1 2 2 + +:::{grid-item-card} Dr. Jaideep Joshi +:margin: 2 2 0 0 +:link: project_team.html + +```{image} _static/images/people/jaideep_joshi.png +:alt: Dr. Jaideep Joshi +:class: team-photo +``` + +Jaideep's current research focuses on developing eco-evolutionary vegetation models to +understand the role of biodiversity and adaptation in forest responses to climate +change. He is an Assistant Professor at the Centre for Climate Studies at IIT Bombay. +::: + +:::{grid-item-card} Dr. David Orme +:margin: 2 2 0 0 +:link: https://profiles.imperial.ac.uk/d.orme + +```{image} _static/images/people/david_orme.jpeg +:alt: Dr. David Orme +:class: team-photo +``` + +David is a data scientist with interests in macroecology, macroevolution and landscape +ecology. He is one of the programmers for the Virtual Ecosystem, with particular focus +on the model core and the plants science model. He is based at the Silwood Park Campus +at Imperial College London. + +::: + +:::{grid-item-card} Dr. Vivienne Groner +:margin: 2 2 0 0 +:link: https://profiles.imperial.ac.uk/v.groner + +```{image} _static/images/people/vivienne_groner.jpg +:alt: Dr. Vivienne Groner +:class: team-photo +``` + +Vivienne is an Earth system scientist with focus on the interaction between climate +change and biodiversity. She is one of the programmers for the Virtual Ecosystem, with +particular focus on the abiotic and hydrology science model. Vivienne is based at the +Silwood Park Campus at Imperial College London. +::: + +:::{grid-item-card} Dr. Jacob Cook +:margin: 2 2 0 0 +:link: project_team.html + +```{image} _static/images/people/jacob_cook.jpg +:alt: Dr. Jacob Cook +:class: team-photo +``` + +Jacob is a microbial ecologist whose work focuses on developing improved representations +of microbial communities in ecological models. He is one of the programmers for the +Virtual Ecosystem, with a particular focus on the soil and litter science models. He is +based at the Silwood Park Campus at Imperial College London. +::: + +:::{grid-item-card} Dr. Taran Rallings +:margin: 2 2 0 0 +:link: project_team.html + +```{image} _static/images/people/taran_rallings.jpg +:alt: Dr. Taran Rallings +:class: team-photo +``` + +Taran is a food-web ecologist with a focus on animal communities and paleoecology. He is +one of the programmers for the Virtual Ecosystem, with a particular focus on the animal +model and trophic interactions. Taran is based at the Silwood Park Campus of Imperial +College London. +::: + +:::{grid-item-card} Professor Priyanga Amarasekare +:margin: 2 2 0 0 +:link: project_team.html + +```{image} _static/images/people/priyanga_amarasekare.png +:alt: Professor Priyanga Amarasekare +:class: team-photo +``` + +Priyanga's research focuses on the role of abiotic environmental variation and biotic +interactions on ecological and evolutionary dynamics, using a combination of +observation, experimentation and mathematical modelling. Priyanga is a Professor in the +Department of Ecology and Evolutionary Biology at UCLA. +::: + +:::{grid-item-card} Sally Matson +:margin: 2 2 0 0 + +```{image} _static/images/people/sally_matson.png +:alt: Sally Matson +:class: team-photo +``` + +Sally is a software engineer with an academic background that includes climate science +and climate change. As a programmer working on the Virtual Ecosystem, she contributes to +both the core structure and science models. +::: + +:::: + +## Model parameterisation and data science + +::::{grid} 1 1 2 2 + +:::{grid-item-card} Dr. Siti Nor Baizurah Abdul Malik +:margin: 2 2 0 0 +:link: project_team.html + +```{image} _static/images/people/sitinorbaizurah.png +:alt: Dr. Siti Nor Baizurah Abdul Malik +:class: team-photo +``` + +Baizurah is a herpetologist focusing on life history, animal ecology, taxonomy and +wildlife conservation in Borneo. She is one of the data scientists focusing on animal +model for the Virtual Ecosystem. She is based at SEARRP, Sabah (Malaysia). +::: + +:::{grid-item-card} Dr. Lelavathy Samikan Mazilamani +:margin: 2 2 0 0 +:link: project_team.html + +```{image} _static/images/people/lelavathy.jpg +:alt: Dr. Lelavathy Samikan Mazilamani +:class: team-photo +``` + +Lela is a hydrologist with a particular focus on the hydrological processes and water +quality in tropical ecosystems, especially in Southeast Asia. As one of the data +scientists for the Virtual Ecosystem, Lela contributes to the abiotic model. Lela is +currently based at SEARRP in Kota Kinabalu (Malaysia). +::: + +:::{grid-item-card} Dr. Hao Ran Lai +:margin: 2 2 0 0 +:link: https://hrlai.netlify.app/ + +```{image} _static/images/people/hao_ran_lai.jpg +:alt: Dr. Hao Ran Lai +:class: team-photo +``` + +Hao Ran is a (mostly plant) community ecologist who works on forest dynamics, functional +traits and statistical modelling. He helps with the soil models of Virtual Ecosystem and +is currently based in Aotearoa New Zealand. +::: + +:::{grid-item-card} Dr. Nicholas Wei Cheng Tan +:margin: 2 2 0 0 +:link: project_team.html + +```{image} _static/images/people/nick_tan.jpg +:alt: Dr. Nicholas Wei Cheng Tan +:class: team-photo +``` + +Nicholas is an animal ecologist with interests in phenotypic evolution and the effects +of climate and land use change on biodiversity. He is one of the data scientists for the +Virtual Ecosystem, with a focus on the animal model. Nicholas is currently based in +Johannesburg, South Africa. +::: + +:::{grid-item-card} Dr. Arne Scheire +:margin: 2 2 0 0 +:link: project_team.html + +```{image} _static/images/people/arne_scheire.jpg +:alt: Arne Scheire +:class: team-photo +``` + +Arne is a plant ecologist with an interest in the functioning, conservation and +management of tropical forests, particularly in Southeast Asia. He is one of the data +scientists for the Virtual Ecosystem, focusing on the plant model. Arne is based at +SEARRP in Kota Kinabalu (Malaysia). +::: + +::::