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getGeo.xml
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16 lines (15 loc) · 776 Bytes
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<tool id="getgeo" name="Retrieve data and features from GEO">
<description></description>
<command interpreter="python">getGeo.py $accession $platform $features $data</command>
<inputs>
<param name="accession" size="10" type="text" value="GSE32982" label="GEO Accession" help="Usually starts with 'GSE'"/>
<param name="platform" size="10" type="text" value="GPL570" label="Platform" help="Platforms can be retrieved with an accession at ncbi.nlm.nih.gov/geo/; if left blank, tool will retrieve the first platform available"/>
</inputs>
<outputs>
<data format="csv" name="features"/>
<data format="tabular" name="data"/>
</outputs>
<help>
Grabs features and data associated with a GEO accession and platform.
</help>
</tool>