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NAMESPACE
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103 lines (102 loc) · 3.39 KB
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# Generated by roxygen2: do not edit by hand
S3method(adt_threshold_assay,Seurat)
S3method(adt_threshold_assay,SingleCellExperiment)
S3method(adt_threshold_assay,default)
S3method(assay_names,AnnDataR6)
S3method(assay_names,Seurat)
S3method(assay_names,SingleCellExperiment)
S3method(assay_names,default)
S3method(assay_names,md._core.mudata.MuData)
S3method(assay_names,mudata._core.mudata.MuData)
S3method(check_dataset,AnnDataR6)
S3method(check_dataset,Seurat)
S3method(check_dataset,SingleCellExperiment)
S3method(check_dataset,default)
S3method(check_dataset,md._core.mudata.MuData)
S3method(check_dataset,mudata._core.mudata.MuData)
S3method(make_key,AnnDataR6)
S3method(make_key,Seurat)
S3method(make_key,SingleCellExperiment)
S3method(make_key,default)
S3method(make_key,md._core.mudata.MuData)
S3method(make_subset,AnnDataR6)
S3method(make_subset,default)
S3method(reduction_names,AnnDataR6)
S3method(reduction_names,Seurat)
S3method(reduction_names,SingleCellExperiment)
S3method(reduction_names,default)
S3method(reduction_names,md._core.mudata.MuData)
S3method(reduction_names,mudata._core.mudata.MuData)
S3method(relabel_axis,AnnDataR6)
S3method(relabel_axis,Seurat)
S3method(relabel_axis,SingleCellExperiment)
S3method(relabel_axis,default)
S3method(relabel_axis,md._core.mudata.MuData)
S3method(relabel_axis,mudata._core.mudata.MuData)
S3method(subset_call,Seurat)
S3method(subset_call,SingleCellExperiment)
S3method(subset_call,default)
S3method(update_object_metadata,AnnDataR6)
S3method(update_object_metadata,Seurat)
S3method(update_object_metadata,SingleCellExperiment)
S3method(update_object_metadata,default)
S3method(update_object_metadata,md._core.mudata.MuData)
export(expr_plot)
export(generate_config_yaml)
export(plot_dot)
export(plot_feature)
export(plot_reduction)
export(plot_ridge)
export(plot_scatter)
export(plot_violin)
export(relabel_axis)
export(run_config)
export(run_scExploreR)
import(Seurat)
import(rlang)
importFrom(RColorBrewer,brewer.pal.info)
importFrom(SeuratObject,DefaultDimReduc)
importFrom(SingleCellExperiment,colData)
importFrom(SingleCellExperiment,reducedDimNames)
importFrom(SingleCellExperiment,reducedDims)
importFrom(cowplot,theme_cowplot)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,dup_axis)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_colorbar)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,margin)
importFrom(ggplot2,scale_color_brewer)
importFrom(ggplot2,scale_color_distiller)
importFrom(ggplot2,scale_color_gradient)
importFrom(ggplot2,scale_color_gradientn)
importFrom(ggplot2,scale_color_identity)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_radius)
importFrom(ggplot2,scale_size)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,sym)
importFrom(ggplot2,theme)
importFrom(ggplot2,unit)
importFrom(ggplot2,vars)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,rgb)
importFrom(patchwork,wrap_plots)
importFrom(scales,hue_pal)
importFrom(scattermore,geom_scattermore)
importFrom(stats,dist)
importFrom(stats,hclust)