therapy-normalization/compose-dev.yaml at main · cancervariants/therapy-normalization · GitHub

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# export VERSION=$(git describe --tags --abbrev=0)
# export DATE=$(date +%F)
# export UMLS_API_KEY=YOUR-API-KEY
# export HARVARD_DATAVERSE_API_KEY=YOUR-API-KEY
# docker volume rm therapy_norm_ddb_vol
# rm -rf dynamodb_local_latest
# mkdir dynamodb_local_latest
# docker volume create --driver local --opt type=none --opt device="$(pwd)/dynamodb_local_latest" --opt o=bind therapy_norm_ddb_vol
# docker compose -f compose-dev.yaml up --build
services:
  api:
    build:
      context: .
      args:
        VERSION: ${VERSION}
        IS_DEV_ENV: "true"
    environment:
      # Dummy AWS credentials, don't need to use real ones
      AWS_ACCESS_KEY_ID: dummy
      AWS_SECRET_ACCESS_KEY: dummy
      AWS_DEFAULT_REGION: us-east-2
      THERAPY_NORM_DB_URL: http://therapy-dynamodb-local:8000
      DISEASE_NORM_DB_URL: http://disease-dynamodb-local:8000
      UMLS_API_KEY: ${UMLS_API_KEY:?set UMLS_API_KEY}
      HARVARD_DATAVERSE_API_KEY: ${HARVARD_DATAVERSE_API_KEY:?set HARVARD_DATAVERSE_API_KEY}
    ports:
      - 127.0.0.1:8001:80

    depends_on:
      disease-dynamodb-local:
        condition: service_started
      therapy-dynamodb-local:
        condition: service_started
    command: ["/bin/bash", "/app/therapy-norm-update.sh"]

  therapy-dynamodb-local:
    command: -jar DynamoDBLocal.jar -sharedDb -dbPath /home/dynamodblocal/dynamodb_local_latest
    image: amazon/dynamodb-local:3.1.0
    ports:
     - 127.0.0.1:8000:8000
    volumes:
      - therapy_norm_ddb_vol:/home/dynamodblocal/dynamodb_local_latest
    working_dir: /home/dynamodblocal

  disease-dynamodb-local:
    image: cancervariants/disease-normalizer-ddb:2025-12-29
    ports:
     - 127.0.0.1:8002:8000

volumes:
  therapy_norm_ddb_vol:
    external: true