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Add RNAseq sanity/QC checks

Status: Open.

#904 In genome/analysis-workflows;

· chrisamiller opened on Jun 24, 2020

Add copy number detection to the somatic WGS pipeline

Status: Open.

#725 In genome/analysis-workflows;

· chrisamiller opened on Jul 2, 2019

Add CN and SV calling to mouse somatic pipelines

Status: Open.

#683 In genome/analysis-workflows;

· chrisamiller opened on May 29, 2019

Clean up example_data directory

Status: Open.

#645 In genome/analysis-workflows;

· johnegarza opened on May 3, 2019

Implement bam-readcount CRAM support

Status: Open.

#942 In genome/analysis-workflows;

· jasonwalker80 opened on Sep 1, 2020

Review software for upgrades

Status: Open.

#948 In genome/analysis-workflows;

· chrisamiller opened on Sep 2, 2020

Validate Workflow Examples with cwltool

Status: Open.

#958 In genome/analysis-workflows;

· tmooney opened on Oct 6, 2020

Write equivalent sequence_align_and_tag.cwl for the bisulfite sequencing pipeline.

Status: Open.

#967 In genome/analysis-workflows;

· Sam16711 opened on Nov 12, 2020

Write equivalent sequence_align_and_tag.cwl for rnaseq, rnaseq_star_fusion, and rnaseq_star_fursion_xenosplit pipelines.

Status: Open.

#970 In genome/analysis-workflows;

· Sam16711 opened on Nov 18, 2020

Validate 2.0 workflows

Status: Open.

#1004 In genome/analysis-workflows;

· chrisamiller opened on Feb 10, 2021