setup.py

from __future__ import print_function
from setuptools import setup, find_packages

with open("README.txt", "r") as fh:
    long_description = fh.read()

print(find_packages())

setup(
    name="hotspots",
    author="Chris Radoux, Peter Curran, Mihaela Smilova",
    author_email="pcurran@ccdc.cam.ac.uk",
	license="MIT",
    version="1.0.0",
    url="https://github.com/prcurran/hotspots",
    packages=find_packages(),
    include_package_data=True,
    # scripts=['src/run_hotspot.py'],
    long_description=long_description,
    long_description_content_type="text/x-rst",
    # Project uses reStructuredText, so ensure that the docutils get
    # installed or upgraded on the target machine
    install_requires=['numpy>=1.9', 'csd-python-api>=2.0.0', 'matplotlib', 'scipy', 'sklearn', 'scikit-image', 'pandas',
                      'futures', 'cython', 'tqdm', 'xmltodict'],
    package_data={
        # If any package contains *.txt or *.rst files, include them:
        '': ['*.txt', '*.rst', '*.pkl'],
        # And include any *.mol2 files found in the 'probes' package, too:
        'hotspots': ['probes/*.mol2'],
    }
)