Wombatmid nosc#87

Open

pearseb wants to merge 20 commits intomainfrom

Commits on Mar 25, 2026

* Nominal oxidation state of carbon in DOM added as inert tracer

pearseb
authored and
dougiesquire
committed
* NOSDOC now a tracer affected by all sources and sinks of DOC

pearseb
authored and
dougiesquire
committed
* Removed pprod_gross and all references to this uncessary diagnostic

pearseb
authored and
dougiesquire
committed
* Variable yields of bacteria computed from NOSDOC and then computed in the code, rather than relying on input parameters

pearseb
authored and
dougiesquire
committed
* Temporary update to NOSDOC tracer and associated parameters to make it vary between 0 and 1, rather than -1 and 0, since we are having issues initialising the field at -1

pearseb
authored and
dougiesquire
committed
* Added ceiling to bacterial yield on DOC that cannot be more than 80% of the max yield on DON

pearseb
authored and
dougiesquire
committed
Add hard ceiling on bacterial growth yield on DON over 90%.

pearseb
authored and
dougiesquire
committed
Changes for fortitude
dougiesquire
committed
Some major updates to WOMBATmid. Making it consistent with the documentation. More to come.

pearseb
authored and
dougiesquire
committed
WOMBATmid: add variable declaration for "theta_opt"

pearseb
authored and
dougiesquire
committed
Changes to WOMBATmid:

pearseb
authored and
dougiesquire
committed
Slight changes to ensure WOMBATmid compiles... just inconsistencies in some of the variable names causing problems

pearseb
authored and
dougiesquire
committed
- removed a number of unused diagnostics

pearseb
authored and
dougiesquire
committed
Changes for fortitude
dougiesquire
committed

Commits on Apr 7, 2026

Renamed regpp3d to rpp3d and also added rpp2d and zsp2d diagnostics
pearseb
committed

Commits on Apr 8, 2026

Fix typos discovered during docs review
dougiesquire
authored

Commits on Apr 9, 2026

WOMBATmid: Remove dic/alk min/max parameters
dougiesquire
authored

Commits on Apr 14, 2026

`do_colloidal_shunt` and `do_two_ligands` logicals added
pearseb
committed

Commits on Apr 16, 2026