Use uv for everything

.github/workflows/docs.yml

@@ -3,36 +3,27 @@ name: Documentation
 on: 
   push:
     branches: [ main]
-  pull_request:
-    branches: [ main]
 
 jobs:
   build:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v3
-    - name: Set up Python
-      uses: actions/setup-python@v4
+    - uses: actions/checkout@v4
+
+    - name: Set up uv
+      uses: astral-sh/setup-uv@v6
       with:
-        python-version: "3.11"
-
-    - name: Install modelskill
-      run: |
-        pip install .[docs]
+        enable-cache: true
+
+    - name: Install dependencies
+      run: uv sync --dev
 
     - name: Build documentation
       run: |
         make docs
 
-    - name: Upload artifacts
-      uses: actions/upload-artifact@v4
-      with:
-        name: docs
-        path: docs/_site/
-
     - name: Publish to GitHub Pages
-      if: github.ref == 'refs/heads/main'
       uses: peaceiris/actions-gh-pages@v3.6.1
       with:
         github_token: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/full_test.yml

@@ -1,45 +1,37 @@
-# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
-# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
-
 name: Full test
 
 on:
   push:
-    branches: [ main]
+    branches: [main]
   pull_request:
+    branches: [main]
 
 jobs:
   build:
-
-    runs-on: ${{ matrix.os }}
+    runs-on: ubuntu-latest
     strategy:
       matrix:
-        os: [ubuntu-latest, windows-latest]
-        python-version: ["3.10", "3.13"]      
+        python-version: ["3.10", "3.13"]
 
     steps:
-    - uses: actions/checkout@v3
-    - uses: astral-sh/ruff-action@v2 # Fail fast if there are any linting errors
-      with:
-        version: 0.6.2
-        src: "modelskill"
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v4
-      with:
-        python-version: ${{ matrix.python-version }}
-    - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        pip install pytest pytest-cov
-
-    - name: Install modelskill
-      run: |
-        pip install .[test]
-    - name: Test with pytest
-      run: |
-        pytest --cov=modelskill --ignore tests/notebooks/
-    - name: Static type check
-      run: make typecheck
-    - name: Test docstrings with pytest
-      run: |
-        pytest ./modelskill/metrics.py --doctest-modules
+      - uses: actions/checkout@v4
+
+      - uses: astral-sh/ruff-action@v2
+        with:
+          version: 0.6.2
+          src: src
+
+      - name: Set up uv
+        uses: astral-sh/setup-uv@v6
+        with:
+          python-version: ${{ matrix.python-version }}
+          enable-cache: true
+
+      - name: Install dependencies
+        run: uv sync --group test --no-dev
+
+      - name: Type check
+        run: make typecheck
+
+      - name: Test
+        run: make test

.github/workflows/notebooks_test.yml

@@ -5,21 +5,22 @@ on:
     branches: [ main]
   pull_request:
     branches: [ main ]
+    types: [review_requested, ready_for_review]
+  workflow_dispatch:
 
 jobs:
   build:
 
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v3
-    - name: Set up Python
-      uses: actions/setup-python@v4
+    - uses: actions/checkout@v4
+    - name: Set up uv
+      uses: astral-sh/setup-uv@v6
       with:
-        python-version: '3.11'    
-    - name: Install modelskill
+        enable-cache: true
+    - name: Install dependencies
+      run: uv sync --group test --group notebooks --no-dev
+    - name: Test notebooks
       run: |
-        pip install .[test,notebooks]    
-    - name: Test notebooks    
-      run: |
-        pytest --durations=0 tests/notebooks/
+        uv run pytest tests/notebooks/

.github/workflows/python-publish.yml

@@ -1,33 +1,52 @@
+# This workflows will upload a Python Package using Twine when a release is created
+# For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries
+
 name: Upload Python Package
 
 on:
   release:
-    types: [created]
+    types: [published]
   workflow_dispatch:
 
 jobs:
-  deploy:
 
+  test:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest, windows-latest]
+        python-version: ["3.10", "3.13"]
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up uv
+      uses: astral-sh/setup-uv@v6
+      with:
+        enable-cache: true
+    - name: Install dependencies
+      run: uv sync --group test --no-dev
+    - name: Test with pytest
+      run: |
+        uv run pytest --ignore tests/performance/ --ignore tests/notebooks/ --disable-warnings
+
+  deploy:
+    needs: test
     runs-on: ubuntu-latest
     permissions:
       # IMPORTANT: this permission is mandatory for trusted publishing
       id-token: write
 
+
     steps:
-    - uses: actions/checkout@v3
-    - name: Set up Python
-      uses: actions/setup-python@v4
+    - uses: actions/checkout@v4
+    - name: Set up uv
+      uses: astral-sh/setup-uv@v6
       with:
-        python-version: '3.11'
+        enable-cache: true
     - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        pip install build wheel twine
-    - name: Install modelskill
-      run: pip install .[test]
-    - name: Test
-      run: pytest
-    - name: Build  
-      run: python -m build
+      run: uv sync --group test --no-dev
+    - name: Build
+      run: uv build
     - name: Publish package distributions to PyPI
       uses: pypa/gh-action-pypi-publish@release/v1
+

.gitignore

@@ -151,4 +151,6 @@ notebooks/Untitled.ipynb
 
 docs/_site/
 docs/_extensions/
-docs/api/*.qmd
+docs/api/*.qmd
+
+uv.lock

Makefile

@@ -1,33 +1,33 @@
-LIB = modelskill
+LIB = src
 
 check: lint typecheck test doctest
 
 build: typecheck test
-	python -m build
+	uv build
 
 lint:
-	ruff check $(LIB)
+	uv run ruff check $(LIB)
 
 format:
-	ruff format $(LIB)
+	uv run ruff format $(LIB)
 
 test:
-	pytest --disable-warnings
+	uv run pytest --disable-warnings
 
 typecheck:
-	mypy $(LIB)/ --config-file pyproject.toml
+	uv run mypy $(LIB)/ --config-file pyproject.toml
 
 doctest:
-	pytest ./modelskill/metrics.py --doctest-modules
+	uv run pytest ./modelskill/metrics.py --doctest-modules
 
 coverage: 
-	pytest --cov-report html --cov=$(LIB) tests/
+	uv run pytest --cov-report html --cov=$(LIB) tests/
 
 docs: FORCE
 	set -e; \
 	cd docs; \
-	quartodoc build; \
-	quarto render; \
+	uv run quartodoc build; \
+	uv run quarto render; \
 	if [ ! -f _site/index.html ]; then \
         echo "Error: index.html not found. Quarto render failed."; \
         exit 1; \

pyproject.toml

@@ -1,14 +1,6 @@
 [build-system]
-requires = ["hatchling"]
-build-backend = "hatchling.build"
-
-[tool.hatch.build]
-include = [
-    "modelskill/**/*",
-]
-
-[tool.hatch.metadata]
-allow-direct-references = true
+requires = ["uv_build>=0.8.9,<0.9.0"]
+build-backend = "uv_build"
 
 [project]
 name = "modelskill"
@@ -46,7 +38,7 @@ classifiers = [
     "Topic :: Scientific/Engineering",
 ]
 
-[project.optional-dependencies]
+[dependency-groups]
 docs = [
     "quarto-cli==1.5.57",
     "quartodoc==0.9.1",