Patch 11#34
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nasimzf wants to merge 3 commits intoDNA-and-Natural-Algorithms-Group:fdann-develfrom
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If use_fattenhelper is set to True, then it will not call myBuilder.fattenStateSpace(), instead it will use fattenhelper.py which calls fattenStateSpace_batch from builder.py. This will use a constant amount of memory ( <1GB) throughout the fattening of the state space. Also, added fattenhelper.py and changed builder.py
Added three functions, transitionMerge_2, mergeSet_2 and fattenStateSpace_batch , which are used alongside fattenhelper.py to avoid memory leak in test_string_method.py.
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In test_string_method.py, if use_fattenhelper is set to True, then it will not call myBuilder.fattenStateSpace(), instead it will use fattenhelper.py which calls fattenStateSpace_batch from builder.py. This will use a constant amount of memory ( <1GB) throughout the fattening of the state space.
for this I've added three functions to builder.py , I've changed test_string_method.py and I've added use_fattenhelper.py
Also, I get some file not closed error in builder.py with statements like this: myFile = open(self.the_dir + str(myOptions.interface.current_seed) + "/protospace.txt", "r")
So I've changed such statements with statements like: with open(self.the_dir + str(myOptions.interface.current_seed) + "/protospace.txt", "r") as myFile: