Search results

I don't understand what tama_remove_single_read_models_levels.py filters on

Status: Open.

#156 In GenomeRIK/tama;

· ctat41 opened on Jan 7, 2026

TAMA collapse on large BAM/SAM files

Status: Open.

#155 In GenomeRIK/tama;

· ChrissiKalk97 opened on Jan 5, 2026

What is the maximum sample size supported by TAMA?

Status: Open.

#154 In GenomeRIK/tama;

· MR-D-CJ opened on Jun 10, 2025

Whether the TAMA merge program is supported to resume operation after an unexpected interruption

Status: Open.

#153 In GenomeRIK/tama;

· MR-D-CJ opened on Jun 9, 2025

Inquiry Regarding TAMA Collapse Output on Nanopore Iso-Seq Data

Status: Open.

#152 In GenomeRIK/tama;

· aaannaw opened on May 14, 2025

Compared to the individual level, the number of transcripts after TAMA merge is significantly reduced

Status: Open.

#150 In GenomeRIK/tama;

· MR-D-CJ opened on Mar 21, 2025

SQANTi3 generated gtf file running TAMA forma converstion error

Status: Open.

#149 In GenomeRIK/tama;

· MR-D-CJ opened on Mar 14, 2025

-m parameter

Status: Open.

#143 In GenomeRIK/tama;

· KMbio43 opened on Feb 4, 2025

GSTAMA_COLLAPSE error - ref_allele = fasta_dict[scaffold][var_pos] IndexError: list index out of range

Status: Open.

#142 In GenomeRIK/tama;

· jlandry69 opened on Dec 3, 2024

Some cds region missed when The bed to gtf by tama_convert_bed_gtf_ensembl_orf_nmd.py

Status: Open.

#141 In GenomeRIK/tama;

· Xueliang24 opened on Nov 13, 2024

IndexError: list index out of range

Status: Open.

#140 In GenomeRIK/tama;

· NikoHensley opened on Oct 8, 2024

Understanding the behaviour of duplicate transcript groups

Status: Open.

#139 In GenomeRIK/tama;

· omarelgarwany opened on Jul 18, 2024