Hello,
Do you have any experience using paragraph with whole exome data? One question I have is how to calculate/handle depth. Running idxdepth gives the genome average, and thus is almost zero. I assume I could calculate a better depth estimate by giving it windows or calculating across non-zero positions, but I would appreciate any guidance you might have.
Hello,
Do you have any experience using paragraph with whole exome data? One question I have is how to calculate/handle depth. Running idxdepth gives the genome average, and thus is almost zero. I assume I could calculate a better depth estimate by giving it windows or calculating across non-zero positions, but I would appreciate any guidance you might have.