Improve soil nutrient documentation

[jacobcook1995]

The "Theory" and "Implementation" documentation of the soil nutrient pools and cycling processes is out of date and needs to be updated. This is something of a moving target as I am currently reworking this section of the code. However, I can make a start on restructuring this section of the documentation as I am doing this, so that the documentation of the final structure doesn't lag the implementation that much.

[hrlai]

If you already has a PR in progress please feel free to let me know. Happy to edit it together. I have some suggestions, e.g., maom_desorption_rate can have a clearer description to say that it is the desorption from MAOM to LMWC. This is also a term missing from the Millennial Model, i.e., there is no $F_{ml}$ term in Equation 16 in Abramoff et al. (2018), right? I can't find out but it seems that they assumed that it is negligible, hence our very small value at 1e-05?

[jacobcook1995]

Yes I'll try and get a draft PR up tomorrow which we could then co-edit.

Something I need to make clear about is the mineral association aspect, this differs from all the model that the soil model derives from, and I need to make clear the logic behind the setup I've implemented