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Plant data preparation details docs#1448

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jacobcook1995 merged 16 commits intofeature/docs-ui-updatefrom
plant_model_details_docs
Mar 23, 2026
Merged

Plant data preparation details docs#1448
jacobcook1995 merged 16 commits intofeature/docs-ui-updatefrom
plant_model_details_docs

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Description

This PR adds a section for the specific data needs of the plant model to the user docs. This is based partly on what was already in the user docs and partly based on feedback from @arne-exe.

@arne-exe I made most of the smaller changes you suggested about the flow of the documents. Though annoyingly I couldn't get the link to the correct view of the variable table to work in text (it's quite fiddly/brittle even when it's on its own line). If there's anything else you feel should be altered feel free to suggest it

The point about the axis information is a really good one, but not one we can address at the moment. I made an issue to track this (see #1445)

A lot of the other comments were about making sure the variables had up to date descriptions/values. This isn't really something I can do as I'm not familiar enough with the plants model, when I asked David about this he said it isn't something he has time to address pre-MVP. So I think it's best kicked down the road till then (i.e. post Easter). What I did was go through the issues you've raised and addressed the ones where the change that needed to be made was clear to me. This only turned out to be two issues, but at least that's a start.

@davidorme, if you could also check that the changes look sane that would be great!

This is the relevant documentation to look at

Fixes #1377
Fixes #1379

@jacobcook1995 jacobcook1995 changed the base branch from develop to feature/docs-ui-update March 17, 2026 15:27
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codecov-commenter commented Mar 17, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 94.09%. Comparing base (44dc4fc) to head (e027ca7).

Additional details and impacted files
@@                   Coverage Diff                   @@
##           feature/docs-ui-update    #1448   +/-   ##
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  Coverage                   94.09%   94.09%           
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  Files                          72       72           
  Lines                        7581     7581           
=======================================================
  Hits                         7133     7133           
  Misses                        448      448           

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Hi Jacob, thanks for including these changes, this looks good.
I've added a few small extra changes.

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@arne-exe I made most of the smaller changes you suggested about the flow of the documents. Though annoyingly I couldn't get the link to the correct view of the variable table to work in text (it's quite fiddly/brittle even when it's on its own line). If there's anything else you feel should be altered feel free to suggest it

No worries, it would have been nice to add this if there was an easy way to do it but this is not essential.

The point about the axis information is a really good one, but not one we can address at the moment. I made an issue to track this (see #1445)

Alright.

A lot of the other comments were about making sure the variables had up to date descriptions/values. This isn't really something I can do as I'm not familiar enough with the plants model,

Yeah makes sense, I am quite familiar with the plants model (or like to think I am) but it's hard for me to verify if descriptions match the calculations in the code due to the unfamiliar syntax in the code. It also doesn't help that many of the descriptions are either vague or open for interpretation in multiple ways.

when I asked David about this he said it isn't something he has time to address pre-MVP. So I think it's best kicked down the road till then (i.e. post Easter).

I understand, deciding the priority of this given your timeline is up to you. I can see how this is less important from a coding perspective, but I think it's fair to say that from a calibration point of view this is a serious concern. I do hope that this is not something that gets buried and forgotten.

What I did was go through the issues you've raised and addressed the ones where the change that needed to be made was clear to me. This only turned out to be two issues, but at least that's a start.

Thanks for doing that Jacob!

jacobcook1995 and others added 5 commits March 18, 2026 09:16
Co-authored-by: arne-scheire <97458577+arne-exe@users.noreply.github.com>
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Co-authored-by: arne-scheire <97458577+arne-exe@users.noreply.github.com>
…n.md

Co-authored-by: arne-scheire <97458577+arne-exe@users.noreply.github.com>
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One minor comment

@jacobcook1995 jacobcook1995 merged commit b7fef4b into feature/docs-ui-update Mar 23, 2026
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@jacobcook1995 jacobcook1995 deleted the plant_model_details_docs branch March 23, 2026 11:40
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tissue lignin units canopy_fruit_n incorrect units and dimension

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