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Merging develop into feature/docs-ui-update branch#1504

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jacobcook1995 merged 43 commits intofeature/docs-ui-updatefrom
docs_ui_develop_merge
Apr 13, 2026
Merged

Merging develop into feature/docs-ui-update branch#1504
jacobcook1995 merged 43 commits intofeature/docs-ui-updatefrom
docs_ui_develop_merge

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Description

Quick PR to ensure that the docs improvement branch isn't substantially lagging develop

jacobcook1995 and others added 30 commits March 20, 2026 09:58
…lem-of-negative-precipitation

replaced dummy climate data
…rbon_mineralised-has-the-wrong-return-units

Fixed return units of calculate_carbon_mineralised
…l-return-diurnal-range

1466 abiotic model return diurnal range
…xcontrib-mermaid-from-the-dependancy

Remove `sphinxcontrib-mermaid` as a dependancy
…xref-is-deprecated

Removing `sphinx-hoverxref` as a dependancy
…hould-use-biomass-triplets

Replaced relevant soil pools with biomass triplets
Bumps the development-dependencies group with 2 updates: [hypothesis](https://github.com/HypothesisWorks/hypothesis) and [ipython](https://github.com/ipython/ipython).


Updates `hypothesis` from 6.151.9 to 6.151.10
- [Release notes](https://github.com/HypothesisWorks/hypothesis/releases)
- [Commits](HypothesisWorks/hypothesis@hypothesis-python-6.151.9...hypothesis-python-6.151.10)

Updates `ipython` from 9.11.0 to 9.12.0
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](ipython/ipython@9.11.0...9.12.0)

---
updated-dependencies:
- dependency-name: hypothesis
  dependency-version: 6.151.10
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: development-dependencies
- dependency-name: ipython
  dependency-version: 9.12.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: development-dependencies
...

Signed-off-by: dependabot[bot] <support@github.com>
…velopment-dependencies-a0d20228a1

Bump the development-dependencies group with 2 updates
dependabot bot and others added 13 commits March 30, 2026 12:12
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 5 to 6.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](codecov/codecov-action@v5...v6)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-version: '6'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
…_actions/codecov/codecov-action-6

Bump codecov/codecov-action from 5 to 6
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.15.7 → v0.15.8](astral-sh/ruff-pre-commit@v0.15.7...v0.15.8)
…ate-config

[pre-commit.ci] pre-commit autoupdate
…hedocs-build-image-to-one-that-isnt-about-to-be-dropped

Updated readthedocs ubuntu build image from 20.04 to 24.04
Bumps the production-dependencies group with 1 update: [numpy](https://github.com/numpy/numpy).


Updates `numpy` from 2.4.3 to 2.4.4
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.4.3...v2.4.4)

---
updated-dependencies:
- dependency-name: numpy
  dependency-version: 2.4.4
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: production-dependencies
...

Signed-off-by: dependabot[bot] <support@github.com>
…oduction-dependencies-1670832c3b

Bump numpy from 2.4.3 to 2.4.4 in the production-dependencies group
Bumps the development-dependencies group with 4 updates: [types-jsonschema](https://github.com/python/typeshed), [types-tqdm](https://github.com/python/typeshed), [mypy](https://github.com/python/mypy) and [ruff](https://github.com/astral-sh/ruff).


Updates `types-jsonschema` from 4.26.0.20260325 to 4.26.0.20260402
- [Commits](https://github.com/python/typeshed/commits)

Updates `types-tqdm` from 4.67.3.20260303 to 4.67.3.20260402
- [Commits](https://github.com/python/typeshed/commits)

Updates `mypy` from 1.19.1 to 1.20.0
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](python/mypy@v1.19.1...v1.20.0)

Updates `ruff` from 0.15.8 to 0.15.9
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.15.8...0.15.9)

---
updated-dependencies:
- dependency-name: types-jsonschema
  dependency-version: 4.26.0.20260402
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: development-dependencies
- dependency-name: types-tqdm
  dependency-version: 4.67.3.20260402
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: development-dependencies
- dependency-name: mypy
  dependency-version: 1.20.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: development-dependencies
- dependency-name: ruff
  dependency-version: 0.15.9
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: development-dependencies
...

Signed-off-by: dependabot[bot] <support@github.com>
…velopment-dependencies-4c846af65b

Bump the development-dependencies group across 1 directory with 4 updates
updates:
- [github.com/astral-sh/ruff-pre-commit: v0.15.8 → v0.15.9](astral-sh/ruff-pre-commit@v0.15.8...v0.15.9)
- [github.com/pre-commit/mirrors-mypy: v1.19.1 → v1.20.0](pre-commit/mirrors-mypy@v1.19.1...v1.20.0)
…ate-config

[pre-commit.ci] pre-commit autoupdate
@jacobcook1995 jacobcook1995 requested review from TaranRallings, davidorme and vgro and removed request for davidorme April 13, 2026 09:08
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👍

@jacobcook1995 jacobcook1995 enabled auto-merge April 13, 2026 09:23
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Codecov Report

❌ Patch coverage is 79.10448% with 14 lines in your changes missing coverage. Please review.
✅ Project coverage is 94.11%. Comparing base (e027ca7) to head (e814dd7).
⚠️ Report is 38 commits behind head on feature/docs-ui-update.

Files with missing lines Patch % Lines
...ample_data/generation_scripts/soil_example_data.py 0.00% 10 Missing ⚠️
...le_data/generation_scripts/climate_example_data.py 0.00% 4 Missing ⚠️
Additional details and impacted files
@@                    Coverage Diff                     @@
##           feature/docs-ui-update    #1504      +/-   ##
==========================================================
+ Coverage                   94.09%   94.11%   +0.02%     
==========================================================
  Files                          72       72              
  Lines                        7581     7615      +34     
==========================================================
+ Hits                         7133     7167      +34     
  Misses                        448      448              

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

@jacobcook1995 jacobcook1995 merged commit 32dbdb0 into feature/docs-ui-update Apr 13, 2026
13 checks passed
@jacobcook1995 jacobcook1995 deleted the docs_ui_develop_merge branch April 13, 2026 09:26
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5 participants