ImperialCollegeLondon · github-actions · Dec 23, 2024 · Dec 23, 2024 · Dec 23, 2024
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -5,13 +5,13 @@ repos:
       - id: check-merge-conflict
       - id: debug-statements
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.8.3
+    rev: v0.8.4
     hooks:
       - id: ruff        #  Run the linter.
         args: [--fix, --exit-non-zero-on-fix]
       - id: ruff-format #  Run the formatter.
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: "v1.13.0"
+    rev: "v1.14.0"
     hooks:
       - id: mypy
         additional_dependencies: [types-jsonschema, xarray, types-tabulate, numpy==2.1.3]
@@ -20,7 +20,7 @@ repos:
     hooks:
     - id: markdownlint
   - repo: https://github.com/mwouts/jupytext
-    rev: v1.16.5
+    rev: v1.16.6
     hooks:
     - id: jupytext
       args: [--pipe, black]

diff --git a/docs/source/api/core.md b/docs/source/api/core.md
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diff --git a/docs/source/api/core/axes.md b/docs/source/api/core/axes.md
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diff --git a/docs/source/api/core/base_model.md b/docs/source/api/core/base_model.md
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diff --git a/docs/source/api/core/config.md b/docs/source/api/core/config.md
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diff --git a/docs/source/api/core/constants.md b/docs/source/api/core/constants.md
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diff --git a/docs/source/api/core/constants_class.md b/docs/source/api/core/constants_class.md
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diff --git a/docs/source/api/core/constants_loader.md b/docs/source/api/core/constants_loader.md
@@ -7,7 +7,7 @@ jupytext:
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diff --git a/docs/source/api/core/core_components.md b/docs/source/api/core/core_components.md
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diff --git a/docs/source/api/core/data.md b/docs/source/api/core/data.md
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diff --git a/docs/source/api/core/exceptions.md b/docs/source/api/core/exceptions.md
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diff --git a/docs/source/api/core/grid.md b/docs/source/api/core/grid.md
@@ -7,7 +7,7 @@ jupytext:
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diff --git a/docs/source/api/core/logger.md b/docs/source/api/core/logger.md
@@ -7,7 +7,7 @@ jupytext:
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diff --git a/docs/source/api/core/readers.md b/docs/source/api/core/readers.md
@@ -7,7 +7,7 @@ jupytext:
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diff --git a/docs/source/api/core/registry.md b/docs/source/api/core/registry.md
@@ -7,7 +7,7 @@ jupytext:
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diff --git a/docs/source/api/core/schema.md b/docs/source/api/core/schema.md
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diff --git a/docs/source/api/core/utils.md b/docs/source/api/core/utils.md
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diff --git a/docs/source/api/core/variables.md b/docs/source/api/core/variables.md
@@ -7,7 +7,7 @@ jupytext:
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diff --git a/docs/source/api/example_data.md b/docs/source/api/example_data.md
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diff --git a/docs/source/api/main.md b/docs/source/api/main.md
@@ -7,7 +7,7 @@ jupytext:
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diff --git a/docs/source/api/models.md b/docs/source/api/models.md
@@ -7,7 +7,7 @@ jupytext:
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diff --git a/docs/source/api/models/abiotic.md b/docs/source/api/models/abiotic.md
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diff --git a/docs/source/api/models/abiotic/abiotic_constants.md b/docs/source/api/models/abiotic/abiotic_constants.md
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diff --git a/docs/source/api/models/abiotic/abiotic_model.md b/docs/source/api/models/abiotic/abiotic_model.md
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diff --git a/docs/source/api/models/abiotic/abiotic_tools.md b/docs/source/api/models/abiotic/abiotic_tools.md
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diff --git a/docs/source/api/models/abiotic/conductivities.md b/docs/source/api/models/abiotic/conductivities.md
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diff --git a/docs/source/api/models/abiotic/energy_balance.md b/docs/source/api/models/abiotic/energy_balance.md
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diff --git a/docs/source/api/models/abiotic/soil_energy_balance.md b/docs/source/api/models/abiotic/soil_energy_balance.md
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diff --git a/docs/source/api/models/abiotic/wind.md b/docs/source/api/models/abiotic/wind.md
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diff --git a/docs/source/api/models/abiotic_simple.md b/docs/source/api/models/abiotic_simple.md
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diff --git a/docs/source/api/models/abiotic_simple/abiotic_simple_constants.md b/docs/source/api/models/abiotic_simple/abiotic_simple_constants.md
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diff --git a/docs/source/api/models/abiotic_simple/abiotic_simple_model.md b/docs/source/api/models/abiotic_simple/abiotic_simple_model.md
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diff --git a/docs/source/api/models/abiotic_simple/microclimate.md b/docs/source/api/models/abiotic_simple/microclimate.md
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diff --git a/docs/source/api/models/animal.md b/docs/source/api/models/animal.md
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diff --git a/docs/source/api/models/animal/animal_cohorts.md b/docs/source/api/models/animal/animal_cohorts.md
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diff --git a/docs/source/api/models/animal/animal_model.md b/docs/source/api/models/animal/animal_model.md
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diff --git a/docs/source/api/models/animal/animal_traits.md b/docs/source/api/models/animal/animal_traits.md
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diff --git a/docs/source/api/models/animal/constants.md b/docs/source/api/models/animal/constants.md
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diff --git a/docs/source/api/models/animal/decay.md b/docs/source/api/models/animal/decay.md
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diff --git a/docs/source/api/models/animal/functional_group.md b/docs/source/api/models/animal/functional_group.md
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diff --git a/docs/source/api/models/animal/plant_resources.md b/docs/source/api/models/animal/plant_resources.md
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diff --git a/docs/source/api/models/animal/protocols.md b/docs/source/api/models/animal/protocols.md
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