Add proper explanation of soil carbon and macronutrient cycles to the soil model documentation#752

Merged

jacobcook1995 merged 46 commits intodevelopfrom

662-improve-soil-nutrient-documentation

May 22, 2025

Commits on Feb 19, 2025

Split documentation of soil theory across three new pages
jacobcook1995
committed
Added new pages to the toc tree
jacobcook1995
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Improved wording of overall soil theory summary
jacobcook1995
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Added a summary to the new soil carbon page
jacobcook1995
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Added necromass to the list of carbon pools we represent
jacobcook1995
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Added disclaimer paragraph about soil physical prtection of carbon
jacobcook1995
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Added a description of the animal and plant inputs to the soil model
jacobcook1995
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Added root exudates to the inputs section (I had forgotten them)
jacobcook1995
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Added explanation of the basics of how soil model microbial growth works
jacobcook1995
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Added a description of how the enzyme mediated decomposition rates are calculated
jacobcook1995
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Commits on Feb 26, 2025

Commits on Mar 4, 2025

Commits on Apr 2, 2025

slighly more details for MAOM
hrlai
authored

Commits on Apr 3, 2025

Commits on Apr 4, 2025

Commits on Apr 25, 2025

Commits on Apr 28, 2025

Commits on Apr 29, 2025

Added details of inorganic nitrogen processes to the docs
jacobcook1995
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Commits on May 6, 2025

Added details of the environmental factors affecting nitrification and denitrifcation
jacobcook1995
committed

Commits on May 8, 2025

Corrected cue model equation
jacobcook1995
committed

Commits on May 21, 2025

minor tweaks to heading hierarchy and wording to be consistent
hrlai
committed

Commits on May 22, 2025