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Pull requests list

Turn AFE protocols into multiple units
#1776 opened Jan 4, 2026 by IAlibay • Draft
6 of 9 tasks
1
4
Moving AFE Protocols around a bit
#1775 opened Jan 3, 2026 by IAlibay Loading…
4 of 6 tasks
3
[WIP] Add ressume support to HybridTop simulation unit
#1774 opened Jan 3, 2026 by IAlibay • Draft
2 of 7 tasks
1
2
Create setup, run, and analysis units for HybridTop Protocol
#1773 opened Jan 3, 2026 by IAlibay • Draft
2 of 7 tasks
1
3
Have two separate system generators for state A & B in hybrid protocol
#1772 opened Jan 3, 2026 by IAlibay • Draft
4 of 7 tasks
1
2
HybridTop structural analysis via API rather than CLI
#1771 opened Jan 3, 2026 by IAlibay • Draft
3 of 6 tasks
1
1
Breakdown rfe protocolunit
#1770 opened Jan 3, 2026 by IAlibay Loading…
3 of 6 tasks
15
Add support for result tokenizables to warehouse
#1763 opened Dec 19, 2025 by ethanholz Loading…
3 of 7 tasks
3
making some language clearer on github-facing things
#1758 opened Dec 17, 2025 by atravitz Loading…
7 tasks
2
[wait to merge] move to src layout
#1752 opened Dec 16, 2025 by atravitz • Draft
6 of 7 tasks
2
vendor perses atom mapper
#1637 opened Oct 28, 2025 by mikemhenry • Draft
1 of 2 tasks
1
@mikemhenry
5
[WIP] Net charge support in ABFEs
#1614 opened Oct 23, 2025 by IAlibay Loading…
2 tasks
1
2
[WIP] add contributing guidelines
#1580 opened Oct 14, 2025 by atravitz • Draft
1 of 2 tasks
@atravitz
20
[ WIP ] Membrane support prototype
#1561 opened Oct 9, 2025 by hannahbaumann Loading…
1 of 2 tasks
@IAlibay @jthorton @hannahbaumann
43
pin openmmtools with numpy fix
#1558 opened Oct 8, 2025 by atravitz • Draft
2 tasks
1
2
move network plotting to konnektor priority:medium
#1522 opened Sep 18, 2025 by atravitz • Draft
1 of 2 tasks
1.9.0
3
add cuda pin to conda lock generation
#1496 opened Sep 3, 2025 by atravitz • Draft
2 tasks
@mikemhenry
3
first pass on a QA script
#1306 opened May 27, 2025 by mikemhenry • Draft
2 tasks
5
Adjust plain MD simulation PDB writing & production step counter
#1302 opened May 26, 2025 by IAlibay Loading…
2 tasks done
1
9
Zip test data
#1226 opened Apr 7, 2025 by atravitz • Draft
1 of 2 tasks
1
@atravitz
2
add air gapped data upload docs
#1156 opened Feb 21, 2025 by atravitz • Draft
2 tasks
1
3
Trying to speed up CI a little bit priority:medium
#1131 opened Feb 14, 2025 by IAlibay Loading…
1 task done
@IAlibay @atravitz
15
[DNM] Test a self self transformation with different charges
#1116 opened Feb 5, 2025 by IAlibay • Draft
2 tasks
2
Utility function changes for protein mutations
#1106 opened Jan 30, 2025 by ijpulidos • Draft
2 tasks
@ijpulidos @IAlibay
4
[WIP] cli json inspection
#1055 opened Dec 13, 2024 by atravitz • Draft
2 tasks
@atravitz
3
ProTip! Updated in the last three days: updated:>2026-01-04.