RabbitTClust v.2.3.0

• add the --fast option of the clust-mst for support fast kssd sketching algorithm.

Note that the Source code only contains the source file about RabbitTClust.
To get the whole source code including submodules, please download
https://github.com/RabbitBio/RabbitTClust/releases/download/v.2.3.0/RabbitTClust_avx2_v.2.3.0.tar.gz

RabbitTClust v.2.2.1

• add the --newick-tree option to output newick tree format for clust-mst

Note that the Source code only contains the source file about RabbitTClust.
To get the whole source code including submodules, please download
RabbitTClust_v.2.2.1.tar.gz

RabbitTClust v.2.2.0

• support incremental clustering by --append option

Note that the Source code only contains the source file about RabbitTClust.
To get the whole source code including submodules, please download
RabbitTClust_v2.2.0.tar.gz

RabbitTClust v2.1.0

RabbitTClust_v2.1.0.tar.gz

• change the parameter parsing by CLI11
• save the intermediate files (sketch, MST files) in binary format.
• abrogate the -f opotion for loading pre-generated sketch or MST files, replaced by --presketched and --premsted options.
  More details by clust-mst --help and clust-greedy --help.

Note that the Source code only contains the source file about RabbitTClust.
To get the whole source code including submodules, please download
RabbitTClust_v2.1.0.tar.gz

RabbitTClust v2.0.3

Add the parameter -m to set the minimum genome length (minLen); genomes with lengths less than minLen will be ignored.
The last version has a fixed minLen of 10000 which can not be changed.

Source files of RabbitTClust and its submodules.
Note that the Source code only contains the source file about RabbitTClust.
To get the whole source code including submodules, please download
RabbitTClust_v2.0.3.tar.gz

RabbitTClust v2.0.2

Update the calSize of gz files for kmer size automatic generation.

Source files of RabbitTClust and its submodules.
Note that the Source code only contains the source file about RabbitTClust.
To get the whole source code including submodules, please download
RabbitTClust_v2.0.2.tar.gz

RabbitTClust v2.0.1

Update the latest version of robin-hood-hashing to solve the compile error with g++ 12.0+.

Source files of RabbitTClust and its submodules.
Note that the Source code only contains the source file about RabbitTClust.
To get the whole source code including submodules, please download
RabbitTClust_v2.0.1.tar.gz

RabbitTClust v2.0.0

Add the cluster-greedy module.

Source files of RabbitTClust and its submodules.
Note that the Source code only contains the source file about RabbitTClust.
To get the whole source code including submodules, please download RabbitTClust_v2.0.0.tar.gz

v1.0.0

Source files of RabbitTClust and its submodules.
Note that the Source code only contains the source file about RabbitTClust.
To get the whole source code including submodules, please download
RabbitTClust_v1.0.0.tar.gz