Skip to content

Apply fix for deprecated SeuratObject code#1

Merged
wish1832 merged 1 commit intomasterfrom
oliviaellis65-fix-slot-deprecation
Mar 18, 2026
Merged

Apply fix for deprecated SeuratObject code#1
wish1832 merged 1 commit intomasterfrom
oliviaellis65-fix-slot-deprecation

Conversation

@wish1832
Copy link
Copy Markdown
Collaborator

This pull request makes a minor update to the wilcoxauc.Seurat function in R/wilcoxauc.R, changing the argument name from slot to layer when calling Seurat::GetAssayData. The slot parameter was broken with SeuratObject v5.3.0. and later, causing the original version of Presto to fail with the latest version of SeuratObject. This fix was originally submitted as a PR to the original Presto but has not been merged as of March 17th, 2026.

@wish1832 wish1832 requested review from a team and kriemo March 18, 2026 00:27
@wish1832 wish1832 merged commit 6e57396 into master Mar 18, 2026
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants