Rounge-lab
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CRCbiome_virome_2023
CRCbiome_virome_2023 PublicThis repository contains code for processing of sequencing data and virus predictions, and data analysis used to generate results in Istvan et al.
R 4
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world-of-fungi
world-of-fungi PublicEvaluation of six bioinformatic tools (Kraken2, MetaPhlAn 3 and 4, FindFungi, FunOMIC, HumanMycobiomeScan and EukDetect) for their ability to classify fungal genomes
Python 3
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GENOMICON-Seq
GENOMICON-Seq PublicGENOMICON-Seq is a simulation platform designed for genetic variation exploration through amplicon sequencing and whole exome sequencing (WES). This tool enables users to create virtual DNA samples…
C++ 2
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skin_microbiome_16S_seq_analyses
skin_microbiome_16S_seq_analyses PublicThis repository contains code for pre-processing and analysis of 16S rRNA data used to generate results in the paper "Skin bacterial community dynamics of hands and forearms before and after milita…
R 2
Repositories
- FIT_metaproteomics Public
Rounge-lab/FIT_metaproteomics’s past year of commit activity - CRISPR_interactions Public
Rounge-lab/CRISPR_interactions’s past year of commit activity - sex-differences Public
This repository contains R scripts used to analyze sex-specific microbial differences in the CRCbiome study, with a focus on sex-specific colorectal cancer–associated gut microbiome signatures.
Rounge-lab/sex-differences’s past year of commit activity - GENOMICON-Seq Public
GENOMICON-Seq is a simulation platform designed for genetic variation exploration through amplicon sequencing and whole exome sequencing (WES). This tool enables users to create virtual DNA samples with adjustable mutation frequencies, helping to understand the effects of simulated library prep biases and errors on mutation detection.
Rounge-lab/GENOMICON-Seq’s past year of commit activity - VirMake Public
VirMake is a Snakemake based pipeline that offers viral metagenic data analysis on paired-end data. It offers taxonomic and functional annotation, supports offline running and support for HPC cluster execution. It is made for Linux based systems and has been tested on SLURM cluster execution.
Rounge-lab/VirMake’s past year of commit activity - Microbiome-signatures-CRCbiome Public
This repository contains code for analysis of microbial profiles used to generate results in Birkeland et al.
Rounge-lab/Microbiome-signatures-CRCbiome’s past year of commit activity - GENOMICON-Seq_Study_cases Public
Rounge-lab/GENOMICON-Seq_Study_cases’s past year of commit activity - VirMake-demo Public
Rounge-lab/VirMake-demo’s past year of commit activity - LC_biomarkers_Validation Public
This repository contains the scripts used for the external validation of predictive models described in the manuscript "Recommendations for validating omics prediction models: Insights from a lung cancer RNA biomarker study".
Rounge-lab/LC_biomarkers_Validation’s past year of commit activity - mock_mycobiome Public
Rounge-lab/mock_mycobiome’s past year of commit activity
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