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Mici

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Mici.jl is a Julia package implementing Markov chain Monte Carlo (MCMC) methods for generating approximate samples from target probability distributions of interest, for example in Bayesian inference applications. The package is particularly focused on MCMC methods which simulate Hamiltonian dynamics on a manifold. Mici.jl implements the AbstractMCMC interface and can be used to generate samples from distributions specified using the LogDensityPoblems.jl interface. The design of the package is inspired by the corresponding Python Mici package.

Installation

To install the latest development version of the package, open a Julia REPL, enter the package manager by typing ] then run

add https://github.com/UCL/Mici.jl

Documentation

Documentation for the current development version of the package is available on GitHub Pages.

Tests

Packages tests are included in the test directory and can be run from a local clone of the repository by launching a REPL in the root of the repository, typing ] to enter the package manager then running test.

License

The package is released under an MIT license.

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Manifold Markov chain Monte Carlo methods in Julia

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