gatk4.0.11.0 normal in the first and tumor in the latter, so allele frequence gives the normal sample now, a wrong value, vcf is different from the example.vcf given by the author

[kobejamescurry]

c

[kobejamescurry]

at least, code here should add a estimate， where is the normal and tumor, the colum[9] is not constant, should be changed to this