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Apply fix for deprecated SeuratObject code#1

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wish1832 merged 1 commit intomasterfrom
oliviaellis65-fix-slot-deprecation
Mar 18, 2026
Merged

Apply fix for deprecated SeuratObject code#1
wish1832 merged 1 commit intomasterfrom
oliviaellis65-fix-slot-deprecation

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This pull request makes a minor update to the wilcoxauc.Seurat function in R/wilcoxauc.R, changing the argument name from slot to layer when calling Seurat::GetAssayData. The slot parameter was broken with SeuratObject v5.3.0. and later, causing the original version of Presto to fail with the latest version of SeuratObject. This fix was originally submitted immunogenomics#44 to the original Presto but has not been merged as of March 17th, 2026.

@wish1832 wish1832 merged commit 00d4f54 into master Mar 18, 2026
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