GH-48805: [CI][R] test-r-alpine-linux-cran fails with segmentation fault

[jonkeane]

It looks like there's a mismatch on our Alpine builds. I'm a little bit surprised that only that build is seeing it.

I don't think this will totally solve the problem though, and we will actually need to do #48817

Resolves: #48805

Rationale for this change

Stop the build failures

What changes are included in this PR?

Remove a flag

Are these changes tested?

They are basically in the tests

Are there any user-facing changes?

• GitHub Issue: [CI][R] test-r-alpine-linux-cran fails with segmentation fault #48805

[jonkeane]

@github-actions crossbow submit test-r-alpine-linux-cran

[github-actions]

⚠️ GitHub issue #48805 has been automatically assigned in GitHub to PR creator.

[github-actions]

Revision: d0ac70a

Submitted crossbow builds: ursacomputing/crossbow @ actions-fa8248adc4

Task	Status
test-r-alpine-linux-cran

[jonkeane]

@thisisnic you might have more information / better idea if the approach here is a good one?

[jonkeane]

Yeah, looks like this is not sufficient: https://github.com/ursacomputing/crossbow/actions/runs/20896750061/job/60036514136#step:7:2664

/arrow/r/check/arrow.Rcheck/00_pkg_src/arrow/libarrow/arrow-22.0.0.100000343/include/arrow/result.h:350:5: note: 'ValueOrDie' was previously declared here
  350 |   T ValueOrDie() && {
      |     ^
In function 'assign',
    inlined from '_S_assign' at /usr/include/c++/14.2.0/bits/basic_string.h:455:23,
    inlined from '_S_assign' at /usr/include/c++/14.2.0/bits/basic_string.h:450:7,
    inlined from '_M_replace_aux' at /usr/include/c++/14.2.0/bits/basic_string.tcc:471:17,
    inlined from 'append' at /usr/include/c++/14.2.0/bits/basic_string.h:1499:30,
    inlined from 'resize' at /usr/include/c++/14.2.0/bits/basic_string.tcc:405:14,
    inlined from 'resize' at /usr/include/c++/14.2.0/bits/basic_string.h:1119:21,
    inlined from 'GenerateSubtrees' at /arrow/cpp/src/arrow/dataset/subtree_internal.h:121:23,
    inlined from 'EncodeOneGuarantee' at /arrow/cpp/src/arrow/dataset/subtree_internal.h:130:21,
    inlined from 'EncodeGuarantees' at /arrow/cpp/src/arrow/dataset/subtree_internal.h:138:25,
    inlined from 'SetupSubtreePruning' at /arrow/cpp/src/arrow/dataset/file_base.cc:291:42:
/usr/include/c++/14.2.0/bits/char_traits.h:964:25: warning: iteration 4611686018427387903 invokes undefined behavior [-Waggressive-loop-optimizations]
  964 |           assign(__s[__i], __a);
      |                         ^
/usr/include/c++/14.2.0/bits/char_traits.h:963:34: note: within this loop
  963 |         for (size_t __i = 0; __i < __n; ++__i)
      |                                  ^
installing to /arrow/r/check/arrow.Rcheck/00LOCK-arrow/00new/arrow/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location

 *** caught segfault ***
address 0, cause 'unknown'
An irrecoverable exception occurred. R is aborting now ...
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location

 *** caught segfault ***
address 0, cause 'unknown'
An irrecoverable exception occurred. R is aborting now ...
** testing if installed package keeps a record of temporary installation path

[thisisnic]

Not too sure sorry, @jonkeane

I've been using this as a guide for creating the alpine images: https://github.com/bastistician/Rcheck/tree/results/musl

[jonkeane]

Ok, yeah I suspect #48819 will be the way. alpine passes on that branch