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biomaverick/README.md

Bioinformatics Banner

Hi, I'm Debojyoti Chatterjee

MSc Bioinformatics student | Exploring data & NGS analysis, APIs, and AI/ML · Passionate about research collaboration & data-driven discovery

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About Me

I’m currently pursuing my Master’s in Bioinformatics, with growing experience in data analysis, NGS workflows, and API development.
I enjoy building tools that transform raw biological data into meaningful insights, and I’m especially curious about how AI/ML can advance research in life sciences.

I am currently exploring the world of Genomics, Proteomics, Cancer Biology, and Chemoinformatics.
My main research interests rest in research collaboration, bioinformatics pipelines, and applied machine learning in biology.

Recently, I worked on a project exploring data APIs of various bioinformatics databases such as UniProt, NCBI, and KEGG, integrating them in a minimal dashboard for easier access—aimed at making scientific workflows more reproducible, accessible, and faster.

Outside of research and academics, I enjoy reading books, clicking photos, making videos, and learning instruments.


My Aim?

  • Develop bioinformatics tools and pipelines that turn raw data (NGS, sequence, structural) into reproducible insights.
  • Build robust API wrappers (UniProt, NCBI, KEGG) and data pipelines to simplify biological data access and integration.
  • Design interactive dashboards (Streamlit) and automated reporting workflows (ReportLab/Python) for faster research decisions.
  • Utilize data analysis and computational methods for sequence/structural analysis, protein–ligand interactions, and drug discovery.
  • Explore the role of AI/ML in life sciences, with interests spanning protein modeling, systems biology, and cancer bioinformatics.
  • Highlight clarity, collaboration, and reproducibility in every project—ensuring code, data, and documentation are research-ready.

⚡ Skills & Tools

Programming & Scripting


Bioinformatics Tools & Databases


Structural Biology Tools


Machine Learning & AI


☁️ Workflow, Cloud & HPC


Web & Development


🧑‍💻 Programming & Scripting

  • Python (Biopython, Matplotlib)
  • R (ggplot2, edgeR, DESeq2)
  • Shell scripting (Bash, Linux environment)
  • Jupyter Notebook
  • Miniconda

🧬 Bioinformatics Tools & Databases

  • NCBI (BLAST, GEO, SRA)
  • UniProt, PDB, Pfam
  • Ensembl Genome Browser
  • ExPASy suite (ProtParam, Translate, SwissSidechain)
  • STRING (protein-protein interactions)
  • MEGA (phylogenetic analysis)

📊 Data Analysis & Statistics

  • RStudio (statistical analysis, visualization)

🧩 Structural Biology Tools

  • PyMOL, Chimera, ChimeraX
  • AlphaFold DB
  • Modeller
  • SWISS-MODEL
  • AlphaFold Protein Structure Database
  • Robetta (Baker Lab)
  • Structure Validation / Comparison
  • SWISS-MODEL Structure Assessment
  • PROCHECK

🤖 Machine Learning & AI

  • TensorFlow
  • Keras
  • Scikit-learn
  • Pandas
  • NumPy

☁️ Cloud & HPC

  • Google Colab / Kaggle notebooks
  • Cluster computing basics (batch job submission, Linux servers)

📑 Document Preparation

  • Markdown (GitHub-friendly docs, READMEs)

🌐 Web & Development Basics

  • HTML(for portfolio/CV pages)
  • Git & GitHub (version control, project hosting)

Popular repositories Loading

  1. CURIO CURIO Public

    CURIO is an interactive bioinformatics platform that unifies access to major biological databases including UniProt, PubMed, NCBI Gene, Reactome, KEGG, STRING, and Protein Structures. It provides b…

    Python 1

  2. biomaverick biomaverick Public