Review Sensitive Files in Repository#9
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cafferychen777 merged 3 commits intomainfrom Oct 24, 2025
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- Delete debug scripts with hardcoded developer paths: - outputs/compare_tangram_data_sources.py - outputs/diagnose_tangram_clusters.py - Remove internal development documentation: - outputs/CARD_DATA_COMPREHENSIVE_TEST.md - outputs/DECONVOLUTION_FIX_SUMMARY.md - outputs/TANGRAM_FIX_VERIFICATION.md - outputs/GENE_NAME_CASE_INVESTIGATION.md - outputs/GENE_PARAM_REDUNDANCY_ANALYSIS.md - Update .gitignore to prevent future commits: - Add outputs/*.py pattern - Add outputs/*_TEST.md, *_FIX*.md, *_INVESTIGATION.md patterns - Add outputs/*_ANALYSIS.md, *_VERIFICATION.md patterns These files contained developer-specific paths and internal bug fix documentation that should not be exposed to end users. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
Changes: - Delete internal test documentation files: - tests/README.md - tests/integration/README.md These contained hardcoded developer paths and are only needed locally. - Replace hardcoded developer paths with generic examples in user docs: - docs/getting-started/quick-start.md - docs/getting-started/installation.md - docs/getting-started/configuration.md - INSTALLATION.md Changed all "/Users/apple/Research/SpatialTrans_MCP/..." paths to "/Users/yourname/Projects/..." for better privacy and universality. - Update code documentation: - chatspatial/utils/path_utils.py Changed docstring example path to generic format. These changes protect developer privacy while maintaining documentation clarity and educational value. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
Deleted files (not suitable for public repository): - docs/内存使用审计报告.md (823 lines) Internal memory usage audit report with detailed performance analysis and optimization TODOs. Exposes unfinished technical debt. - tests/e2e/test_plan.md (182 lines) Internal QA test plan with detailed test procedures and acceptance criteria. Not useful for end users. - docs/test-build.sh (45 lines) Developer utility script for local Jekyll testing. Configuration cleanup: - docs/_config.yml - Removed Chinese language comments - Changed localhost URL to production GitHub Pages URL - Replaced "http://localhost:4000" with production URL - Converted all internal comments to English Impact: Removed ~1,050 lines of internal documentation that should never have been in the public repository. Repository is now cleaner and more professional for public consumption. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
cafferychen777
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Oct 26, 2025
This directory should not be tracked in the repository. Github-Issue: #9
cafferychen777
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Dec 30, 2025
* Remove sensitive internal development files from repository - Delete debug scripts with hardcoded developer paths: - outputs/compare_tangram_data_sources.py - outputs/diagnose_tangram_clusters.py - Remove internal development documentation: - outputs/CARD_DATA_COMPREHENSIVE_TEST.md - outputs/DECONVOLUTION_FIX_SUMMARY.md - outputs/TANGRAM_FIX_VERIFICATION.md - outputs/GENE_NAME_CASE_INVESTIGATION.md - outputs/GENE_PARAM_REDUNDANCY_ANALYSIS.md - Update .gitignore to prevent future commits: - Add outputs/*.py pattern - Add outputs/*_TEST.md, *_FIX*.md, *_INVESTIGATION.md patterns - Add outputs/*_ANALYSIS.md, *_VERIFICATION.md patterns These files contained developer-specific paths and internal bug fix documentation that should not be exposed to end users. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com> * Remove developer personal paths from documentation Changes: - Delete internal test documentation files: - tests/README.md - tests/integration/README.md These contained hardcoded developer paths and are only needed locally. - Replace hardcoded developer paths with generic examples in user docs: - docs/getting-started/quick-start.md - docs/getting-started/installation.md - docs/getting-started/configuration.md - INSTALLATION.md Changed all "/Users/apple/Research/SpatialTrans_MCP/..." paths to "/Users/yourname/Projects/..." for better privacy and universality. - Update code documentation: - chatspatial/utils/path_utils.py Changed docstring example path to generic format. These changes protect developer privacy while maintaining documentation clarity and educational value. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com> * Remove internal development files and clean up configuration Deleted files (not suitable for public repository): - docs/内存使用审计报告.md (823 lines) Internal memory usage audit report with detailed performance analysis and optimization TODOs. Exposes unfinished technical debt. - tests/e2e/test_plan.md (182 lines) Internal QA test plan with detailed test procedures and acceptance criteria. Not useful for end users. - docs/test-build.sh (45 lines) Developer utility script for local Jekyll testing. Configuration cleanup: - docs/_config.yml - Removed Chinese language comments - Changed localhost URL to production GitHub Pages URL - Replaced "http://localhost:4000" with production URL - Converted all internal comments to English Impact: Removed ~1,050 lines of internal documentation that should never have been in the public repository. Repository is now cleaner and more professional for public consumption. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com> --------- Co-authored-by: Claude <noreply@anthropic.com>
cafferychen777
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Dec 30, 2025
This directory should not be tracked in the repository. Github-Issue: #9
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