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Inferring reproducible tumour microenvironment ecosystems from scRNA-seq atlases

This repository contains the source code used for analyses model training in the paper "Inferring reproducible tumour microenvironment ecosystems from scRNA-seq atlases".

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Chengxin Yu, Kieran Campbell

Lunenfeld-Tanenbaum Research Institute & University of Toronto

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Code implementing the analysis workflow and the probabilistic model for decoding multicellular ecosystems in PDAC

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