Update 26 packages

[carpentries-bot]

🤖 This is an automated build

This will update 26 packages in your lesson with the following versions:

# NEW OR REMOVED PACKAGES -------------------------------
- KernSmooth  [required by gplots, Seurat]
- MASS        [required by fitdistrplus, sctransform, Seurat]
- mgcv        [required by spacexr]
- nlme        [required by metafor, spatstat.explore]
- survival    [required by fitdistrplus]
- KernSmooth   [2.23-26 -> *]
- MASS         [7.3-65 -> *]
- mgcv         [1.9-4 -> *]
- nlme         [3.1-168 -> *]
- survival     [3.8-6 -> *]

# CRAN -----------------------------------------------------------------------
- clue           [0.3-66 -> 0.3-67]
- cluster        [repo: RSPM -> CRAN; ver: 2.1.8.1 -> 2.1.8.2]
- DBI            [1.2.3 -> 1.3.0]
- dbplyr         [2.5.1 -> 2.5.2]
- dplyr          [1.1.4 -> 1.2.0]
- dtplyr         [1.3.2 -> 1.3.3]
- future.apply   [1.20.1 -> 1.20.2]
- ggplot2        [4.0.1 -> 4.0.2]
- ggrepel        [0.9.6 -> 0.9.7]
- httr           [1.4.7 -> 1.4.8]
- igraph         [2.2.1 -> 2.2.2]
- later          [1.4.5 -> 1.4.7]
- lattice        [repo: RSPM -> CRAN; ver: 0.22-7 -> 0.22-9]
- lubridate      [1.9.4 -> 1.9.5]
- openssl        [2.3.4 -> 2.3.5]
- readr          [2.1.6 -> 2.2.0]
- reticulate     [1.44.1 -> 1.45.0]
- shiny          [1.12.1 -> 1.13.0]
- sp             [repo: RSPM -> CRAN; ver: 2.2-0 -> 2.2-1]
- viridisLite    [0.4.2 -> 0.4.3]
- xtable         [repo: RSPM -> CRAN; ver: 1.8-4 -> 1.8-8]
- KernSmooth     [* -> 2.23-26]
- MASS           [* -> 7.3-65]
- mgcv           [* -> 1.9-4]
- nlme           [* -> 3.1-168]
- survival       [* -> 3.8-6]

⏱️ In a few minutes, a comment will appear that will show you how the output has changed based on these updates.

If you want to inspect these changes locally, you can use the following code to check out a new branch:

git fetch origin update/packages
git checkout update/packages

• Auto-generated by create-pull-request on 2026-03-03

[github-actions]

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