Unable to build with R 3.6.0 on Mac OS 10.13.6 #519
Description
- Cloned this repo to my Mac
HEADis5df2127ffbash ./_build.shproduces warnings about missing packages- See below for what I've installed
- Still getting error from lines 905-919 (07-wt-ed-ds-pipeline.Rmd) (see error log attached).
Installation:
> devtools::install_github("data-edu/dataedu")
> install.packages("RefManageR")
> install.packages("apaTables")
> install.packages("sjPlot")
R:
> sessionInfo()
R version 3.6.0 (2019-04-26)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.6
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib
locale:
[1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_3.6.0
Output from _build.sh:
Rscript -e "bookdown::render_book('index.Rmd', 'bookdown::gitbook')"
processing file: index.Rmd
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$ fig.cap: chr "The Tweet That Started It All"
$ echo : logi FALSE
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output file: index.knit.md
processing file: 01-introduction.Rmd
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output file: 01-introduction.knit.md
processing file: 02-how-to-use.Rmd
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output file: 02-how-to-use.knit.md
processing file: 03-data-scientist-in-edu.Rmd
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output file: 03-data-scientist-in-edu.knit.md
processing file: 04-special-considerations.Rmd
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output file: 04-special-considerations.knit.md
processing file: 05-foundational-skills_1.Rmd
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$ fig.cap: chr "Icons"
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$ fig.cap: chr "RStudio Layout"
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$ fig.cap: chr "Creating a new R Script in RStudio"
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$ fig.cap: chr "Selecting Global Options from the Tool Dropdown Menu"
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$ fig.cap: chr "General tab from Global Options"
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$ fig.cap: chr "RStudio layout with the Environment Pane Minimized"
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$ fig.cap: chr "Accessing the Pane Layout from the View Dropdown Menu"
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$ fig.cap: chr "Pane Layout options within RStudio"
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$ fig.cap: chr "Using the Console as a Calculator"
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$ fig.cap: chr "Printing Text to the Console"
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$ fig.cap: chr "Incomplete Parentheses Change what R Expects Next"
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output file: 05-foundational-skills_1.knit.md
processing file: 06-foundational-skills_2.Rmd
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$ fig.cap: chr "Image of the Packages pane, which is found in the bottom right corner of the RStudio IDE, along with the Files,"| __truncated__
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$ fig.cap: chr "Error message when running ?mutate"
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$ fig.cap: chr "Example from the `coalesce()` Help documentation"
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$ fig.cap: chr "List of attached packages and associated conflicts when loading the Tidyverse"
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$ fig.cap: chr "Loading the `ma_data` Dataset"
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$ fig.cap: chr "The Treachery of Images by Magritte"
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output file: 06-foundational-skills_2.knit.md
processing file: 07-wt-ed-ds-pipeline.Rmd
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$ message: symbol F
$ warning: symbol F
── Attaching packages ─────────────────────────────────────── tidyverse 1.2.1 ──
✔ ggplot2 3.3.0.9000 ✔ purrr 0.3.3
✔ tibble 3.0.0 ✔ dplyr 0.8.3
✔ tidyr 1.0.0 ✔ stringr 1.4.0
✔ readr 1.3.1 ✔ forcats 0.4.0
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag() masks stats::lag()
Learn more about sjPlot with 'browseVignettes("sjPlot")'.
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List of 4
$ warning: logi FALSE
$ message: logi FALSE
$ results: chr "hide"
$ fig.cap: chr "Example Plot"
Quitting from lines 905-919 (07-wt-ed-ds-pipeline.Rmd)
Error in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y, :
polygon edge not found
Calls: local ... <Anonymous> -> widthDetails -> widthDetails.text -> grid.Call
In addition: There were 30 warnings (use warnings() to see them)
Execution halted
Error in Rscript_render(f, render_args, render_meta) :
Failed to compile 07-wt-ed-ds-pipeline.Rmd
Calls: <Anonymous> -> render_new_session -> Rscript_render
Execution halted