Bug summary
Training atomic dipoles returns nan values unless the data is labelled as atom_.npy instead of atomic_.npy.
DeePMD-kit Version
DeePMD-kit v3.0.1
Backend and its version
TF
How did you download the software?
conda
Input Files, Running Commands, Error Log, etc.
{
"_comment": "that's all",
"model"
: {
"type_map"
: [
"C",
"N",
"O",
"H",
"X",
"Z"
],
"descriptor": {
"type" : "se_e2_a",
"sel": "auto",
"rcut_smth": 0.5,
"rcut" : 6.0,
"neuron": [
16,
32,
48],
"resnet_dt": false,
"seed": 1,
"_comment": " that's all" },
"fitting_net": {
"type": "dipole",
"sel_type": [2],
"neuron"
: [
150,
150,
150
],
"resnet_dt": true,
"seed": 1222,
"activation_function": "tanh",
"_comment": " that's all"
},
"_comment": " that's all"
},
"learning_rate"
: {
"type": "exp",
"decay_steps": 1000,
"start_lr": 5e-4,
"stop_lr": 1e-8,
"_comment": "that's all"
},
"loss"
: {
"type": "tensor",
"pref": 0.0,
"pref_atomic": 1.0,
"_comment": " that's all"
},
"training"
: {
"training_data"
: {
"systems"
: [
"./training_data"
],
"batch_size": "auto",
"_comment": "that's all"
},
"validation_data":{
"systems": ["./validation_data"],
"batch_size": "auto",
"_comment": "that's all"
},
"numb_steps": 325000,
"seed":7515,
"disp_file": "lcurve.out",
"disp_freq": 100,
"save_freq": 100,
"_comment": "that's all"
},
"_comment": "that's all"
}
Steps to Reproduce
Training atomic dipole model from wannier data
Further Information, Files, and Links
No response
Bug summary
Training atomic dipoles returns nan values unless the data is labelled as atom_.npy instead of atomic_.npy.
DeePMD-kit Version
DeePMD-kit v3.0.1
Backend and its version
TF
How did you download the software?
conda
Input Files, Running Commands, Error Log, etc.
{
"_comment": "that's all",
"model"
: {
"type_map"
: [
"C",
"N",
"O",
"H",
"X",
"Z"
],
"descriptor": {
"type" : "se_e2_a",
"sel": "auto",
"rcut_smth": 0.5,
"rcut" : 6.0,
"neuron": [
16,
32,
48],
"resnet_dt": false,
"seed": 1,
"_comment": " that's all" },
"fitting_net": {
"type": "dipole",
"sel_type": [2],
"neuron"
: [
150,
150,
150
],
"resnet_dt": true,
"seed": 1222,
"activation_function": "tanh",
"_comment": " that's all"
},
"_comment": " that's all"
},
"learning_rate"
: {
"type": "exp",
"decay_steps": 1000,
"start_lr": 5e-4,
"stop_lr": 1e-8,
"_comment": "that's all"
},
"loss"
: {
"type": "tensor",
"pref": 0.0,
"pref_atomic": 1.0,
"_comment": " that's all"
},
"training"
: {
"training_data"
: {
"systems"
: [
"./training_data"
],
"batch_size": "auto",
"_comment": "that's all"
},
"validation_data":{
"systems": ["./validation_data"],
"batch_size": "auto",
"_comment": "that's all"
},
},
"_comment": "that's all"
}
Steps to Reproduce
Training atomic dipole model from wannier data
Further Information, Files, and Links
No response