Releases: fairagro/sciwin
Releases · fairagro/sciwin
v1.2.0
04 Mar 14:43
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Release Notes
🚀 Features
create has option --run-container to execute the command for CommandLineTool creation with provided containerexecute local --apptainer or execute local --singularity to use apptainer/singularity for local execution
🐛 Bugfixes
Fixed bugs with s4n init and the error reporting
Install s4n 1.2.0
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/sciwin/releases/download/v1.2.0/s4n-installer.ps1 | iex" Download s4n 1.2.0
v1.1.0
09 Dec 07:25
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Release Notes
🚀 Features
create now has --env option to load in an .env filemade inputs and outputs prefix optional in connect
🐛 Bugfixes
default values are used on input connections
Fixed some bugs in command parsing (s4n create, fixes for python modules)
Better alignment with CWL spec in some points (e.g. glob)
🚜 Refactor
Major restructuring for better maintainability
Install s4n 1.1.0
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v1.1.0/s4n-installer.ps1 | iex" Download s4n 1.1.0
v1.0.0
24 Sep 09:44
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Release Notes
🚀 Features
The commands have changed in v1.0.0 (Breaking Change ). The mapping is as follows:
Old Command
New Command
s4n tool create
s4n create
s4n tool list
s4n list
s4n tool remove
s4n remove
s4n workflow create
s4n create --name (optional!)
s4n workflow list
s4n list
s4n workflow remove
s4n remove
s4n workflow status
s4n list [WORKFLOW_NAME]
s4n workflow connect
s4n connect
s4n workflow disconnect
s4n disconnect
s4n workflow visualize
s4n visualize
s4n workflow save
s4n save
Install s4n 1.0.0
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v1.0.0/s4n-installer.ps1 | iex" Download s4n 1.0.0
v0.8.0
21 Aug 05:55
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Release Notes
🚀 Features
Support Workflows in git submodules #137
Added s4n install and s4n uninstall commands #138
Runner supports scatter and linkMerge now
Support packed CWL Documents in Runner #144
Use ttl.sh to build Docker images for REANA on the fly (fixes #119 )
🐛 Bugfixes
ramping up runner conformance from 204/378 to 223/378
fixed staging of arrays of files and dirs
fixed staging of iwdr arrays
🚜 Refactor
Code restructuring
Consolidation in REANA specific (De)Serialization code #145
Install s4n 0.8.0
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v0.8.0/s4n-installer.ps1 | iex" Download s4n 0.8.0
v0.7.0
22 Jul 13:38
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Release Notes
🚀 Features
Remote Execution using Reana #108
FAIRagro Reana Instance will be provided later, see #42
Credentials stored in keyring #118
Provenance RO-Crate can be created from remote execution 46808af
Possibility to connect all CWL Documents in s4n workflow connect #95
added --mount to s4n tool create to mount directories into working dir #103
added type hints in s4n tool create. Inputs prefixed like s:/mnt/ are then enforced to be of type string.
🐛 Bugfixes
Inputs and Outputs can not have same IDs #113
Install s4n 0.7.0
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v0.7.0/s4n-installer.ps1 | iex" Download s4n 0.7.0
v0.6.1
26 May 09:57
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Release Notes
🚀 Features
Added command s4n workflow visualize which accepts a path and either mermaid or dot as renderer outputting diagrams
Install s4n 0.6.1
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v0.6.1/s4n-installer.ps1 | iex" Download s4n 0.6.1
v0.6.0
21 May 09:31
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Release Notes
🚀 Features
Remote Execution s4n execute remote using REANA (testing) #101 + #108
Added workflow.toml as config format #102
added NetworkAccess Requirement via --net/--enable-network in s4n tool create #104
Support InlineTools in Workflow step #111
Support Expressions, Files and Directories as InitialWorkDirRequirement (in additon to Dirents)
Support Conditional Execution
🐛 Bugfixes
fixed a bug with Dockerfile path resolution
handle NetworkAccess Requirment in runner
inherit parents requirements correclty
ramping up runner conformance from 160/378 to 204/378
Install s4n 0.6.0
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v0.6.0/s4n-installer.ps1 | iex" Download s4n 0.6.0
v0.5.2
15 May 13:23
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Release Notes
🐛 Bugfixes
fixed bugs with the tool create -i argument
Install s4n 0.5.2
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v0.5.2/s4n-installer.ps1 | iex" Download s4n 0.5.2
v0.5.1
15 May 12:12
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Release Notes
🐛 Bugfixes
fixed serialisation error
Install s4n 0.5.1
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v0.5.1/s4n-installer.ps1 | iex" Download s4n 0.5.1
v0.5.0
15 May 09:15
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Release Notes
🚀 Features
Support automatic downloading if files are given with http:// or https:// protocol
Detect URLs as files if given with http:// or https:// protocol
Support Detection of Arrays as inputs in tool create #100
Support ExpressionLibs
🐛 Bugfixes
correctly support DockerRequirement.DockerOutputDirectory#96
made CommandOutputBinding.glob Optional #99
ramping up runner conformance from 131/378 to 160/378
Install s4n 0.5.0
Install prebuilt binaries via shell script
curl --proto ' =https' | sh Install prebuilt binaries via powershell script
powershell -ExecutionPolicy Bypass -c " irm https://github.com/fairagro/m4.4_sciwin_client/releases/download/v0.5.0/s4n-installer.ps1 | iex" Download s4n 0.5.0
