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Flatiron Institute

@simonsfoundation

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New York City
https://flatironinstitute.org/

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CaImAn CaImAn Public

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

Python 716 395
finufft finufft Public

Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3 on the CPU or GPU

C++ 406 100
DeepFRI DeepFRI Public

Deep functional residue identification

Python 348 89
CaImAn-MATLAB CaImAn-MATLAB Public

Complete Matlab pipeline for large scale calcium imaging data analysis

MATLAB 258 152
NoRMCorre NoRMCorre Public

Matlab routines for online non-rigid motion correction of calcium imaging data

MATLAB 155 97
FMM3D FMM3D Public

Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in thre…

Fortran 141 52

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Showing 10 of 225 repositories

numbl Public
Numerical computing environment that aims to be compatible with Matlab

flatironinstitute/numbl’s past year of commit activity

TypeScript 0 Apache-2.0 0 10 2 Updated Mar 13, 2026
psyphy Public
Psychophysical modeling and adaptive trial placement

flatironinstitute/psyphy’s past year of commit activity

Python 5 2 30 (2 issues need help) 1 Updated Mar 12, 2026
jaxmg Public
JAXMg: A multi-GPU linear solver in JAX

flatironinstitute/jaxmg’s past year of commit activity

Cuda 42 Apache-2.0 2 0 0 Updated Mar 12, 2026
finufft Public
Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3 on the CPU or GPU

flatironinstitute/finufft’s past year of commit activity

C++ 406 100 40 (3 issues need help) 5 Updated Mar 12, 2026
adapol Public
Adaptive Pole Fitting for Quantum Many-Body Physics

flatironinstitute/adapol’s past year of commit activity

Jupyter Notebook 12 GPL-3.0 4 1 0 Updated Mar 12, 2026
PyBenchFramework Public
BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.

flatironinstitute/PyBenchFramework’s past year of commit activity

Python 0 1 0 1 Updated Mar 12, 2026
neurosift Public
Browser-based NWB visualization and DANDI exploration

flatironinstitute/neurosift’s past year of commit activity

TypeScript 63 Apache-2.0 14 50 2 Updated Mar 11, 2026
dmk Public
A Dual-space Multilevel Kernel-splitting (DMK) Framework for Discrete and Continuous Convolution

flatironinstitute/dmk’s past year of commit activity

C++ 20 5 12 (1 issue needs help) 1 Updated Mar 10, 2026
FMM3D Public
Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in three dimensions, on a multi-core shared-memory machine.

flatironinstitute/FMM3D’s past year of commit activity

Fortran 141 52 23 1 Updated Mar 10, 2026
ParticleMeshEwald.jl Public
Particle mesh Ewald via NonuniformFFTs.jl

flatironinstitute/ParticleMeshEwald.jl’s past year of commit activity

Julia 2 MIT 0 0 1 Updated Mar 9, 2026

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