COSG v1.0.3

Release v1.0.3

🐛 Fixes

• Fixed the incompatibility with multiple index columns of adata.uns['cosg']['COSG'] in adata.write function

🚀 Improvements

• Enhanced plotMarkerDendrogram function with several new capabilities:
  • Implemented support for customized pairs of cell type and gene list
  • Added color control for nodes and edges
  • Added cell type filtering functionality
  • Integrated support for curved edges in visualization

v1.0.2 – improved marker visualization, normalized COSG scores, batch_key support, and fixes

Release v1.0.2

New Features

• Added plotMarkerDotplot and plotMarkerDendrogram for enhanced marker gene visualization.
• Introduced support for batch_key to compute cosine similarities separately across different batches.
• Enabled calculation of normalized COSG scores for comparing gene expression specificity across cell types or datasets.

Fixes & Improvements

• Resolved a SciPy version deprecation issue related to .A attribute usage.
• Fixed a DataFrame manipulation warning.
• Added verbosity control, allowing users to adjust log output levels.

First release

First release for COSG