[Snyk] Fix for 3 vulnerabilities

[q1blue]

Snyk has created this PR to fix 3 vulnerabilities in the pip dependencies of this project.

Snyk changed the following file(s):

• requirements.txt

⚠️ Warning

transformers 4.30.2 requires tokenizers, which is not installed.
qdrant-client 1.3.1 has requirement numpy<1.21; python_version < "3.8", but you have numpy 1.21.3.
python-docx 1.1.2 has requirement typing-extensions>=4.9.0, but you have typing-extensions 4.5.0.
platformdirs 4.0.0 has requirement typing-extensions>=4.7.1; python_version < "3.8", but you have typing-extensions 4.5.0.
onnxruntime 1.14.1 has requirement numpy>=1.21.6, but you have numpy 1.21.3.
llama-index 0.6.35 requires langchain, which is not installed.
llama-index 0.6.35 requires tiktoken, which is not installed.
llama-index 0.6.35 has requirement fsspec>=2023.5.0, but you have fsspec 2023.1.0.
fake-useragent 1.1.3 has requirement importlib-metadata~=4.0; python_version < "3.8", but you have importlib-metadata 6.6.0.
chromadb 0.3.26 requires duckdb, which is not installed.
chromadb 0.3.26 requires hnswlib, which is not installed.
chromadb 0.3.26 requires tokenizers, which is not installed.
chromadb 0.3.26 has requirement numpy>=1.21.6, but you have numpy 1.21.3.

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Important

• Check the changes in this PR to ensure they won't cause issues with your project.
• Max score is 1000. Note that the real score may have changed since the PR was raised.
• This PR was automatically created by Snyk using the credentials of a real user.
• Some vulnerabilities couldn't be fully fixed and so Snyk will still find them when the project is tested again. This may be because the vulnerability existed within more than one direct dependency, but not all of the affected dependencies could be upgraded.

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EntelligenceAI PR Summary

This PR updates Python package dependencies to newer versions.

• Upgraded filelock from 3.12.0 to 3.20.3 (minor version bump)
• Upgraded pypdf from 3.11.0 to 6.6.0 (major version bump spanning multiple major releases)
• The pypdf upgrade may introduce breaking changes requiring compatibility updates

[entelligence-ai-pr-reviews]

Walkthrough

This PR updates two Python package dependencies in the requirements file. The filelock package receives a minor version upgrade from 3.12.0 to 3.20.3, which likely includes bug fixes and incremental improvements. More significantly, pypdf is upgraded from 3.11.0 to 6.6.0, representing a major version jump across multiple major releases. This substantial upgrade may introduce new features, performance enhancements, and potentially breaking API changes that could require code modifications to maintain compatibility. Both updates aim to keep dependencies current with the latest stable releases.

Changes

File(s)	Summary
requirements.txt	Updated filelock from 3.12.0 to 3.20.3 and pypdf from 3.11.0 to 6.6.0.

Sequence Diagram

This diagram shows the interactions between components:

sequenceDiagram
    participant App as Application
    participant FileOps as File Operations Module
    participant PDFOps as PDF Operations Module
    participant filelock as filelock Library (3.12.0 → 3.20.3)
    participant pypdf as pypdf Library (3.11.0 → 6.6.0)
    
    Note over App,pypdf: Dependency Version Updates Only
    
    App->>FileOps: Initialize file operations
    FileOps->>filelock: Import and use file locking
    Note right of filelock: Updated to v3.20.3<br/>(bug fixes & improvements)
    
    App->>PDFOps: Initialize PDF operations
    PDFOps->>pypdf: Import and use PDF processing
    Note right of pypdf: Updated to v6.6.0<br/>(major version upgrade)
    
    Note over App,pypdf: No architectural changes<br/>Same APIs, updated implementations

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✅ Snyk checks have passed. No issues have been found so far.

Status	Scanner	Critical	High	Medium	Low	Total (0)
✅	Open Source Security	0	0	0	0	0 issues

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