A code repository for custom scripts used in the analyses described in our manuscript "Early and late RNA eQTL are driven by different genetic mechanisms" (Sakaue and Raychaudhuri. to appear in Nat Commun.)
- 01_eQTL: cis-eQTL mapping
- 02_finemap_coloc: finemapping and colocalization analyses between n-eQTL and c-eQTL
- 03_diff_enrich: differential enrichment analyses to characterize genomic annotations preferentially enriched for statistically fine-mapped variants in either n-eQTL or c-eQTL
- 04_disease_coloc: colocalization analyses between eQTL and disease GWAS (neuropsychiatric diseases)
Questions can be sent to Saori Sakaue (ssakaue@broadinstitute.org)