fix(upgrade): tools are not uninstalled properly due to outdated symlink by roele · Pull Request #8099 · jdx/mise

roele · 2026-02-11T00:33:50Z

No description provided.

gemini-code-assist · 2026-02-11T00:34:00Z

Summary of Changes

Hello @roele, I'm Gemini Code Assist¹! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request addresses a critical bug in the upgrade mechanism where tools updated to their latest versions were not being uninstalled correctly. The fix involves reordering a key step in the upgrade process: rebuilding shims and runtime symlinks. By performing this action earlier, the system now accurately reflects the current state of installed tools, preventing the unintended uninstallation of newly upgraded 'latest' versions and ensuring the integrity of the toolset.

Highlights

Upgrade Logic Fix: The order of operations during the upgrade process has been corrected to ensure that tools upgraded to their latest versions are properly handled and not inadvertently marked for uninstallation.
Shim and Runtime Symlink Rebuilding: The rebuilding of shims and runtime symlinks has been moved to occur before determining which versions are needed by tracked configurations. This ensures that 'latest' symlinks correctly point to the newly upgraded versions.

Changelog

src/cli/upgrade.rs
- Moved the rebuild_shims_and_runtime_symlinks function call to an earlier stage in the upgrade process to ensure correct handling of 'latest' versions.

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Code Review

This pull request addresses a bug where tools specified with a latest version were not being uninstalled correctly after an upgrade. The fix involves moving the call to rebuild_shims_and_runtime_symlinks to an earlier point in the process, specifically before checking which tool versions are still needed by other projects. This ensures that latest resolves to the newly installed version, allowing the old version to be correctly identified as obsolete and uninstalled. The change is logical, well-targeted, and effectively resolves the issue. The code is clear and the fix is appropriate.

Copilot

Pull request overview

This PR adjusts the mise upgrade flow to ensure tools upgraded via latest are correctly recognized as “needed” after upgrade, preventing incorrect uninstall decisions caused by stale runtime symlinks.

Changes:

Reorders upgrade steps to rebuild shims/runtime symlinks immediately after Config::reset().
Computes “versions needed by tracked configs” after the rebuild so latest resolves to the newly-installed version.
Removes the previous rebuild call from later in the upgrade flow.

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src/cli/upgrade.rs

@ctaintor

### 🚀 Features - **(activate)** add shims directory as fallback when auto-install is enabled by @ctaintor in [#8106](#8106) - **(env)** add `tools` variable to tera template context by @jdx in [#8108](#8108) - **(set)** add --stdin flag for multiline environment variables by @jdx in [#8110](#8110) ### 🐛 Bug Fixes - **(backend)** improve conda patchelf and dependency resolution for complex packages by @jdx in [#8087](#8087) - **(ci)** fix validate-new-tools grep pattern for test field by @jdx in [#8100](#8100) - **(config)** make MISE_OFFLINE work correctly by gracefully skipping network calls by @jdx in [#8109](#8109) - **(github)** skip v prefix for "latest" version by @jdx in [#8105](#8105) - **(gitlab)** resolve tool options from config for aliased tools by @jdx in [#8084](#8084) - **(install)** use version_expr for Flutter to fix version resolution by @jdx in [#8081](#8081) - **(registry)** add Linux support for tuist by @fortmarek in [#8102](#8102) - **(release)** write release notes to file instead of capturing stdout by @jdx in [#8086](#8086) - **(upgrade)** tools are not uninstalled properly due to outdated symlink by @roele in [#8099](#8099) - **(upgrade)** ensure uninstallation failure does not leave invalid symlinks by @roele in [#8101](#8101) - SLSA for in-toto statement with no signatures by @gerhard in [#8094](#8094) - Vfox Plugin Auto-Installation for Environment Directives by @pose in [#8035](#8035) ### 📚 Documentation - use mise activate for PowerShell in getting-started by @rileychh in [#8112](#8112) ### 📦 Registry - add conda backend for mysql by @jdx in [#8080](#8080) - add conda backends for 10 asdf-only tools by @jdx in [#8083](#8083) - added podman-tui by @tony-sol in [#8098](#8098) ### Chore - sort settings.toml alphabetically and add test by @jdx in [#8111](#8111) ### New Contributors - @ctaintor made their first contribution in [#8106](#8106) - @rileychh made their first contribution in [#8112](#8112) - @fortmarek made their first contribution in [#8102](#8102) - @pose made their first contribution in [#8035](#8035) - @gerhard made their first contribution in [#8094](#8094) ## 📦 Aqua Registry Updates #### New Packages (2) - [`entireio/cli`](https://github.com/entireio/cli) - [`rmitchellscott/reManager`](https://github.com/rmitchellscott/reManager) #### Updated Packages (1) - [`atuinsh/atuin`](https://github.com/atuinsh/atuin)

@ctaintor

### 🚀 Features - **(activate)** add shims directory as fallback when auto-install is enabled by @ctaintor in [#8106](#8106) - **(env)** add `tools` variable to tera template context by @jdx in [#8108](#8108) - **(set)** add --stdin flag for multiline environment variables by @jdx in [#8110](#8110) ### 🐛 Bug Fixes - **(backend)** improve conda patchelf and dependency resolution for complex packages by @jdx in [#8087](#8087) - **(ci)** fix validate-new-tools grep pattern for test field by @jdx in [#8100](#8100) - **(config)** make MISE_OFFLINE work correctly by gracefully skipping network calls by @jdx in [#8109](#8109) - **(github)** skip v prefix for "latest" version by @jdx in [#8105](#8105) - **(gitlab)** resolve tool options from config for aliased tools by @jdx in [#8084](#8084) - **(install)** use version_expr for Flutter to fix version resolution by @jdx in [#8081](#8081) - **(registry)** add Linux support for tuist by @fortmarek in [#8102](#8102) - **(release)** write release notes to file instead of capturing stdout by @jdx in [#8086](#8086) - **(upgrade)** tools are not uninstalled properly due to outdated symlink by @roele in [#8099](#8099) - **(upgrade)** ensure uninstallation failure does not leave invalid symlinks by @roele in [#8101](#8101) - SLSA for in-toto statement with no signatures by @gerhard in [#8094](#8094) - Vfox Plugin Auto-Installation for Environment Directives by @pose in [#8035](#8035) ### 📚 Documentation - use mise activate for PowerShell in getting-started by @rileychh in [#8112](#8112) ### 📦 Registry - add conda backend for mysql by @jdx in [#8080](#8080) - add conda backends for 10 asdf-only tools by @jdx in [#8083](#8083) - added podman-tui by @tony-sol in [#8098](#8098) ### Chore - sort settings.toml alphabetically and add test by @jdx in [#8111](#8111) ### New Contributors - @ctaintor made their first contribution in [#8106](#8106) - @rileychh made their first contribution in [#8112](#8112) - @fortmarek made their first contribution in [#8102](#8102) - @pose made their first contribution in [#8035](#8035) - @gerhard made their first contribution in [#8094](#8094) ## 📦 Aqua Registry Updates #### New Packages (2) - [`entireio/cli`](https://github.com/entireio/cli) - [`rmitchellscott/reManager`](https://github.com/rmitchellscott/reManager) #### Updated Packages (1) - [`atuinsh/atuin`](https://github.com/atuinsh/atuin)

…ink (jdx#8099) Co-authored-by: mise-en-dev <release@mise.jdx.dev>

@ctaintor

### 🚀 Features - **(activate)** add shims directory as fallback when auto-install is enabled by @ctaintor in [jdx#8106](jdx#8106) - **(env)** add `tools` variable to tera template context by @jdx in [jdx#8108](jdx#8108) - **(set)** add --stdin flag for multiline environment variables by @jdx in [jdx#8110](jdx#8110) ### 🐛 Bug Fixes - **(backend)** improve conda patchelf and dependency resolution for complex packages by @jdx in [jdx#8087](jdx#8087) - **(ci)** fix validate-new-tools grep pattern for test field by @jdx in [jdx#8100](jdx#8100) - **(config)** make MISE_OFFLINE work correctly by gracefully skipping network calls by @jdx in [jdx#8109](jdx#8109) - **(github)** skip v prefix for "latest" version by @jdx in [jdx#8105](jdx#8105) - **(gitlab)** resolve tool options from config for aliased tools by @jdx in [jdx#8084](jdx#8084) - **(install)** use version_expr for Flutter to fix version resolution by @jdx in [jdx#8081](jdx#8081) - **(registry)** add Linux support for tuist by @fortmarek in [jdx#8102](jdx#8102) - **(release)** write release notes to file instead of capturing stdout by @jdx in [jdx#8086](jdx#8086) - **(upgrade)** tools are not uninstalled properly due to outdated symlink by @roele in [jdx#8099](jdx#8099) - **(upgrade)** ensure uninstallation failure does not leave invalid symlinks by @roele in [jdx#8101](jdx#8101) - SLSA for in-toto statement with no signatures by @gerhard in [jdx#8094](jdx#8094) - Vfox Plugin Auto-Installation for Environment Directives by @pose in [jdx#8035](jdx#8035) ### 📚 Documentation - use mise activate for PowerShell in getting-started by @rileychh in [jdx#8112](jdx#8112) ### 📦 Registry - add conda backend for mysql by @jdx in [jdx#8080](jdx#8080) - add conda backends for 10 asdf-only tools by @jdx in [jdx#8083](jdx#8083) - added podman-tui by @tony-sol in [jdx#8098](jdx#8098) ### Chore - sort settings.toml alphabetically and add test by @jdx in [jdx#8111](jdx#8111) ### New Contributors - @ctaintor made their first contribution in [jdx#8106](jdx#8106) - @rileychh made their first contribution in [jdx#8112](jdx#8112) - @fortmarek made their first contribution in [jdx#8102](jdx#8102) - @pose made their first contribution in [jdx#8035](jdx#8035) - @gerhard made their first contribution in [jdx#8094](jdx#8094) ## 📦 Aqua Registry Updates #### New Packages (2) - [`entireio/cli`](https://github.com/entireio/cli) - [`rmitchellscott/reManager`](https://github.com/rmitchellscott/reManager) #### Updated Packages (1) - [`atuinsh/atuin`](https://github.com/atuinsh/atuin)

@ctaintor

### 🚀 Features - **(activate)** add shims directory as fallback when auto-install is enabled by @ctaintor in [jdx#8106](jdx#8106) - **(env)** add `tools` variable to tera template context by @jdx in [jdx#8108](jdx#8108) - **(set)** add --stdin flag for multiline environment variables by @jdx in [jdx#8110](jdx#8110) ### 🐛 Bug Fixes - **(backend)** improve conda patchelf and dependency resolution for complex packages by @jdx in [jdx#8087](jdx#8087) - **(ci)** fix validate-new-tools grep pattern for test field by @jdx in [jdx#8100](jdx#8100) - **(config)** make MISE_OFFLINE work correctly by gracefully skipping network calls by @jdx in [jdx#8109](jdx#8109) - **(github)** skip v prefix for "latest" version by @jdx in [jdx#8105](jdx#8105) - **(gitlab)** resolve tool options from config for aliased tools by @jdx in [jdx#8084](jdx#8084) - **(install)** use version_expr for Flutter to fix version resolution by @jdx in [jdx#8081](jdx#8081) - **(registry)** add Linux support for tuist by @fortmarek in [jdx#8102](jdx#8102) - **(release)** write release notes to file instead of capturing stdout by @jdx in [jdx#8086](jdx#8086) - **(upgrade)** tools are not uninstalled properly due to outdated symlink by @roele in [jdx#8099](jdx#8099) - **(upgrade)** ensure uninstallation failure does not leave invalid symlinks by @roele in [jdx#8101](jdx#8101) - SLSA for in-toto statement with no signatures by @gerhard in [jdx#8094](jdx#8094) - Vfox Plugin Auto-Installation for Environment Directives by @pose in [jdx#8035](jdx#8035) ### 📚 Documentation - use mise activate for PowerShell in getting-started by @rileychh in [jdx#8112](jdx#8112) ### 📦 Registry - add conda backend for mysql by @jdx in [jdx#8080](jdx#8080) - add conda backends for 10 asdf-only tools by @jdx in [jdx#8083](jdx#8083) - added podman-tui by @tony-sol in [jdx#8098](jdx#8098) ### Chore - sort settings.toml alphabetically and add test by @jdx in [jdx#8111](jdx#8111) ### New Contributors - @ctaintor made their first contribution in [jdx#8106](jdx#8106) - @rileychh made their first contribution in [jdx#8112](jdx#8112) - @fortmarek made their first contribution in [jdx#8102](jdx#8102) - @pose made their first contribution in [jdx#8035](jdx#8035) - @gerhard made their first contribution in [jdx#8094](jdx#8094) ## 📦 Aqua Registry Updates #### New Packages (2) - [`entireio/cli`](https://github.com/entireio/cli) - [`rmitchellscott/reManager`](https://github.com/rmitchellscott/reManager) #### Updated Packages (1) - [`atuinsh/atuin`](https://github.com/atuinsh/atuin)

Copilot AI review requested due to automatic review settings February 11, 2026 00:33

Copilot started reviewing on behalf of roele February 11, 2026 00:34 View session

gemini-code-assist bot reviewed Feb 11, 2026

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roele force-pushed the fix/7991 branch from 92f0b75 to 7070405 Compare February 11, 2026 00:36

roele changed the title ~~fix(upgrade): tools with latest version are not uninstalled properly~~ fix(upgrade): tools are not uninstalled properly due to outdated symlink Feb 11, 2026

Copilot AI reviewed Feb 11, 2026

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fix(upgrade): tools are not uninstalled properly due to outdated symlink

c029398

roele force-pushed the fix/7991 branch from 7070405 to c029398 Compare February 11, 2026 00:43

jdx merged commit d0e4079 into jdx:main Feb 11, 2026
33 checks passed

mise-en-dev mentioned this pull request Feb 11, 2026

chore: release 2026.2.10 #8082

Merged

roele deleted the fix/7991 branch February 11, 2026 01:40

BrewTestBot mentioned this pull request Feb 12, 2026

mise 2026.2.10 Homebrew/homebrew-core#267117

Merged

lucasew pushed a commit to lucasew/CONTRIB-mise that referenced this pull request Feb 18, 2026

fix(upgrade): tools are not uninstalled properly due to outdated syml…

aefe52f

…ink (jdx#8099) Co-authored-by: mise-en-dev <release@mise.jdx.dev>

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fix(upgrade): tools are not uninstalled properly due to outdated symlink#8099

fix(upgrade): tools are not uninstalled properly due to outdated symlink#8099
jdx merged 1 commit intojdx:mainfrom
roele:fix/7991

roele commented Feb 11, 2026

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roele commented Feb 11, 2026

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