marcusquinn · marcusquinn · Jan 11, 2026 · Jan 11, 2026 · Jan 11, 2026 · Jan 11, 2026
diff --git a/TODO.md b/TODO.md
@@ -113,6 +113,8 @@ Tasks with no open blockers - ready to work on. Use `/ready` to refresh this lis
   - Notes: Document how to analyze CI timing data for adaptive wait optimization. Include commands for extracting timing from GitHub Actions logs and updating shared-constants.sh.
 - [ ] t050 Move SonarCloud hotspot patterns from AGENTS.md to code-review subagent #refactor #docs ~30m (ai:15m test:10m read:5m) logged:2025-01-11
   - Notes: AGENTS.md lines 85-89 contain SonarCloud hotspot patterns (S5332, S6506 exclusions). Move to tools/code-review/ subagent to reduce root AGENTS.md size. Low priority - patterns work fine where they are.
+- [ ] t059 Review and merge unmerged feature branches #git #cleanup ~1h (ai:30m test:15m read:15m) logged:2026-01-11 started:2026-01-11T05:25Z
+  - Notes: Originally 13 branches. Processed 4 this session (PRs #44, #45, #46, #47). Remaining: 9 branches (4 chore, 5 feature). See todo/BRANCH-INVENTORY.md for details.
 - [ ] t052 Agent Design Pattern Improvements #plan → [todo/PLANS.md#agent-design-pattern-improvements] ~1d (ai:6h test:4h read:2h) logged:2025-01-11
   - Notes: Implement remaining improvements from Lance Martin's agent design patterns analysis. Includes: YAML frontmatter for subagents, automatic session reflection, cache-aware prompts, tool description indexing, memory consolidation.
 - [ ] t053 Add YAML frontmatter to source subagents #architecture #agents ~2h (ai:1.5h test:30m) logged:2025-01-11 blocked-by:t052
@@ -175,6 +177,7 @@ t049,Add timing analysis commands to ralph-loop workflow,,workflow|automation,30
 t050,Move SonarCloud hotspot patterns from AGENTS.md to code-review subagent,,refactor|docs,30m,15m,10m,5m,2025-01-11T00:00Z,pending,,,
 t052,Agent Design Pattern Improvements,,plan|architecture|agents|context|optimization,1d,6h,4h,2h,2025-01-11T00:00Z,pending,,,
 t053,Add YAML frontmatter to source subagents,,architecture|agents,2h,1.5h,30m,,2025-01-11T00:00Z,pending,t052,,
+t059,Review and merge unmerged feature branches,,git|cleanup,2h,1h,30m,30m,2026-01-11T00:00Z,pending,,,
 t054,Automatic session reflection to memory,,workflow|memory,4h,2.5h,1h,30m,2025-01-11T00:00Z,pending,t052,,
 t055,Document cache-aware prompt patterns,,docs|optimization,1h,30m,15m,15m,2025-01-11T00:00Z,pending,t052,,
 t056,Tool description indexing for on-demand MCP discovery,,tools|context,3h,2h,45m,15m,2025-01-11T00:00Z,pending,t052,,
@@ -266,5 +269,5 @@ t019.3.4,Update AGENTS.md with Beads integration docs,,beads,1h,45m,2025-12-21T1
 -->
 
 <!--TOON:summary{total,pending,in_progress,in_review,done,declined,total_est,total_actual,blocked_count,ready_count}:
-52,41,0,0,26,0,27d18h,16h50m,0,41
+53,42,0,0,26,0,27d20h,16h50m,0,42
 -->
diff --git a/todo/BRANCH-INVENTORY.md b/todo/BRANCH-INVENTORY.md
@@ -0,0 +1,69 @@
+# Branch Inventory
+
+Generated: 2026-01-11
+Updated: 2026-01-11 (after processing branches 1-4)
+
+This document tracks all unmerged branches with work-in-progress. All branches have been pushed to remote for preservation.
+
+## Summary
+
+| Category | Count | Status |
+|----------|-------|--------|
+| Unmerged branches | 9 | Remaining after cleanup |
+| Merged/Closed | 4 | Processed this session |
+| Active worktrees | 1 | `feature/memory-auto-capture` |
+
+## Processed Branches (This Session)
+
+| Branch | PR | Result |
+|--------|-----|--------|
+| `bugfix/sonarcloud-default-cases` | #44 | Merged |
+| `chore/add-missing-opencode-commands` | #45 | Closed (changes in main via #46) |
+| `chore/agent-review-improvements` | #46 | Merged |
+| `chore/agents-md-progressive-disclosure` | #47 | Closed (changes in main) |
+
+## Remaining Branches
+
+### Ready to Review (Single Commit, Complete)
+
+| Branch | Commit | Description | Action |
+|--------|--------|-------------|--------|
+| `chore/loop-agents-readme-changelog` | `cb18a2a` | Add README and changelog guidance to loop agents | Create PR |
+| `chore/strengthen-git-workflow-instructions` | `090ba39` | Strengthen git workflow instructions | Create PR |
+| `chore/worktree-workflow` | `e9a774d` | Update branch creation to recommend worktrees | Create PR |
+| `feature/mcp-includetools-support` | `ece326b` | Add mcp_requirements frontmatter convention | Create PR |
+
+### Feature Branches (May Need More Work)
+
+| Branch | Commit | Description | Notes |
+|--------|--------|-------------|-------|
+| `feature/beads-integration` | `dcc3f9b` | Integrate Beads task graph visualization | Related to t019 (completed differently) |
+| `feature/domain-research-subagent` | `eb73a51` | Add domain-research subagent with THC/Reconeer APIs | New feature, needs review |
+| `feature/loop-system-v2` | `b17ae11` | Implement v2 architecture with fresh context | Related to t051 (completed via different approach) |
+| `feature/memory-auto-capture` | `531eb2c` | Prevent removal of unpushed branches | Contains worktree fix (may be merged already) |
+| `feature/session-review-command` | Multiple | Add /session-review and /full-loop commands | 4 commits, needs review |
+
+## Worktrees
+
+| Directory | Branch | Status |
+|-----------|--------|--------|
+| `~/Git/aidevops-feature-memory-auto-capture` | `feature/memory-auto-capture` | Clean |
+
+## Next Steps
+
+1. **Review remaining 4 chore branches** - Create PRs and merge
+2. **Evaluate 5 feature branches** - Check if superseded or still needed
+3. **Clean up worktree** - After `feature/memory-auto-capture` is resolved
+
+## Cleanup Commands
+
+```bash
+# Delete remote branches that were merged/closed
+git push origin --delete bugfix/sonarcloud-default-cases
+git push origin --delete chore/add-missing-opencode-commands
+git push origin --delete chore/agent-review-improvements
+git push origin --delete chore/agents-md-progressive-disclosure
+
+# Recreate any branch from remote when needed
+git checkout -b <branch> origin/<branch>
+```