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chore: remove hpacker citation from README.md#119

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josejimenezluna merged 7 commits intomainfrom
jjimenezluna/no-hpacker-citation
May 7, 2025
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chore: remove hpacker citation from README.md#119
josejimenezluna merged 7 commits intomainfrom
jjimenezluna/no-hpacker-citation

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As discussed in the recent Teams interactions, this pull request removes the hpacker citation from the README.md file.

@josejimenezluna josejimenezluna requested a review from a team May 6, 2025 14:52
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github-actions bot commented May 6, 2025

Summary

Summary
Generated on: 05/06/2025 - 15:12:08
Parser: Cobertura
Assemblies: 5
Classes: 22
Files: 22
Line coverage: 66.2% (1639 of 2473)
Covered lines: 1639
Uncovered lines: 834
Coverable lines: 2473
Total lines: 8208
Covered branches: 0
Total branches: 0
Method coverage: Feature is only available for sponsors

Coverage

src.bioemu - 79.1%
Name Line Branch
src.bioemu 79.1% ****
init.py 100%
chemgraph.py 100%
convert_chemgraph.py 68.9%
denoiser.py 96.8%
get_embeds.py 68.6%
md_utils.py 85.8%
models.py 94.1%
run_hpacker.py 0%
sample.py 44.5%
sde_lib.py 84.3%
seq_io.py 100%
shortcuts.py 100%
sidechain_relax.py 77.4%
so3_sde.py 81%
structure_module.py 99%
utils.py 59.3%
src.bioemu.colabfold_setup -
Name Line Branch
src.bioemu.colabfold_setup **** ****
init.py
src.bioemu.hpacker_setup - 58.8%
Name Line Branch
src.bioemu.hpacker_setup 58.8% ****
init.py
setup_hpacker.py 58.8%
src.bioemu.openfold.np - 44%
Name Line Branch
src.bioemu.openfold.np 44% ****
protein.py 31.2%
residue_constants.py 60.7%
src.bioemu.openfold.utils - 50.1%
Name Line Branch
src.bioemu.openfold.utils 50.1% ****
rigid_utils.py 50.1%

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github-actions bot commented May 7, 2025

Summary

Summary
Generated on: 05/07/2025 - 10:54:16
Parser: Cobertura
Assemblies: 5
Classes: 22
Files: 22
Line coverage: 66.2% (1639 of 2473)
Covered lines: 1639
Uncovered lines: 834
Coverable lines: 2473
Total lines: 8208
Covered branches: 0
Total branches: 0
Method coverage: Feature is only available for sponsors

Coverage

src.bioemu - 79.1%
Name Line Branch
src.bioemu 79.1% ****
init.py 100%
chemgraph.py 100%
convert_chemgraph.py 68.9%
denoiser.py 96.8%
get_embeds.py 68.6%
md_utils.py 85.8%
models.py 94.1%
run_hpacker.py 0%
sample.py 44.5%
sde_lib.py 84.3%
seq_io.py 100%
shortcuts.py 100%
sidechain_relax.py 77.4%
so3_sde.py 81%
structure_module.py 99%
utils.py 59.3%
src.bioemu.colabfold_setup -
Name Line Branch
src.bioemu.colabfold_setup **** ****
init.py
src.bioemu.hpacker_setup - 58.8%
Name Line Branch
src.bioemu.hpacker_setup 58.8% ****
init.py
setup_hpacker.py 58.8%
src.bioemu.openfold.np - 44%
Name Line Branch
src.bioemu.openfold.np 44% ****
protein.py 31.2%
residue_constants.py 60.7%
src.bioemu.openfold.utils - 50.1%
Name Line Branch
src.bioemu.openfold.utils 50.1% ****
rigid_utils.py 50.1%

@josejimenezluna josejimenezluna enabled auto-merge (squash) May 7, 2025 12:46
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github-actions bot commented May 7, 2025

Summary

Summary
Generated on: 05/07/2025 - 13:05:05
Parser: Cobertura
Assemblies: 5
Classes: 22
Files: 22
Line coverage: 66.2% (1639 of 2473)
Covered lines: 1639
Uncovered lines: 834
Coverable lines: 2473
Total lines: 8208
Covered branches: 0
Total branches: 0
Method coverage: Feature is only available for sponsors

Coverage

src.bioemu - 79.1%
Name Line Branch
src.bioemu 79.1% ****
init.py 100%
chemgraph.py 100%
convert_chemgraph.py 68.9%
denoiser.py 96.8%
get_embeds.py 68.6%
md_utils.py 85.8%
models.py 94.1%
run_hpacker.py 0%
sample.py 44.5%
sde_lib.py 84.3%
seq_io.py 100%
shortcuts.py 100%
sidechain_relax.py 77.4%
so3_sde.py 81%
structure_module.py 99%
utils.py 59.3%
src.bioemu.colabfold_setup -
Name Line Branch
src.bioemu.colabfold_setup **** ****
init.py
src.bioemu.hpacker_setup - 58.8%
Name Line Branch
src.bioemu.hpacker_setup 58.8% ****
init.py
setup_hpacker.py 58.8%
src.bioemu.openfold.np - 44%
Name Line Branch
src.bioemu.openfold.np 44% ****
protein.py 31.2%
residue_constants.py 60.7%
src.bioemu.openfold.utils - 50.1%
Name Line Branch
src.bioemu.openfold.utils 50.1% ****
rigid_utils.py 50.1%

@josejimenezluna josejimenezluna merged commit dc14ef2 into main May 7, 2025
4 checks passed
@josejimenezluna josejimenezluna deleted the jjimenezluna/no-hpacker-citation branch May 7, 2025 13:05
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2 participants