chore: Add instructions how to use the foundry endpoint

[ryotatomioka]

No description provided.

[github-actions]

Summary

Summary

Generated on:	05/13/2025 - 15:13:03
Parser:	Cobertura
Assemblies:	5
Classes:	22
Files:	22
Line coverage:	66.2% (1639 of 2473)
Covered lines:	1639
Uncovered lines:	834
Coverable lines:	2473
Total lines:	8208
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 79.1%

Name	Line	Branch
src.bioemu	79.1%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	68.9%
denoiser.py	96.8%
get_embeds.py	68.6%
md_utils.py	85.8%
models.py	94.1%
run_hpacker.py	0%
sample.py	44.5%
sde_lib.py	84.3%
seq_io.py	100%
shortcuts.py	100%
sidechain_relax.py	77.4%
so3_sde.py	81%
structure_module.py	99%
utils.py	59.3%

src.bioemu.colabfold_setup -

Name	Line	Branch
src.bioemu.colabfold_setup	****	****
init.py

src.bioemu.hpacker_setup - 58.8%

Name	Line	Branch
src.bioemu.hpacker_setup	58.8%	****
init.py
setup_hpacker.py	58.8%

src.bioemu.openfold.np - 44%

Name	Line	Branch
src.bioemu.openfold.np	44%	****
protein.py	31.2%
residue_constants.py	60.7%

src.bioemu.openfold.utils - 50.1%

Name	Line	Branch
src.bioemu.openfold.utils	50.1%	****
rigid_utils.py	50.1%

[github-actions]

Summary

Summary

Generated on:	05/19/2025 - 09:14:44
Parser:	Cobertura
Assemblies:	5
Classes:	22
Files:	22
Line coverage:	66.2% (1641 of 2477)
Covered lines:	1641
Uncovered lines:	836
Coverable lines:	2477
Total lines:	8214
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 79%

Name	Line	Branch
src.bioemu	79%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	68.9%
denoiser.py	96.8%
get_embeds.py	68.6%
md_utils.py	85.8%
models.py	94.1%
run_hpacker.py	0%
sample.py	44.7%
sde_lib.py	84.3%
seq_io.py	100%
shortcuts.py	100%
sidechain_relax.py	77.4%
so3_sde.py	81%
structure_module.py	99%
utils.py	59.3%

src.bioemu.colabfold_setup -

Name	Line	Branch
src.bioemu.colabfold_setup	****	****
init.py

src.bioemu.hpacker_setup - 58.8%

Name	Line	Branch
src.bioemu.hpacker_setup	58.8%	****
init.py
setup_hpacker.py	58.8%

src.bioemu.openfold.np - 44%

Name	Line	Branch
src.bioemu.openfold.np	44%	****
protein.py	31.2%
residue_constants.py	60.7%

src.bioemu.openfold.utils - 50.1%

Name	Line	Branch
src.bioemu.openfold.utils	50.1%	****
rigid_utils.py	50.1%

[github-actions]

Summary

Summary

Generated on:	05/19/2025 - 09:19:41
Parser:	Cobertura
Assemblies:	5
Classes:	22
Files:	22
Line coverage:	66.2% (1641 of 2477)
Covered lines:	1641
Uncovered lines:	836
Coverable lines:	2477
Total lines:	8214
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 79%

Name	Line	Branch
src.bioemu	79%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	68.9%
denoiser.py	96.8%
get_embeds.py	68.6%
md_utils.py	85.8%
models.py	94.1%
run_hpacker.py	0%
sample.py	44.7%
sde_lib.py	84.3%
seq_io.py	100%
shortcuts.py	100%
sidechain_relax.py	77.4%
so3_sde.py	81%
structure_module.py	99%
utils.py	59.3%

src.bioemu.colabfold_setup -

Name	Line	Branch
src.bioemu.colabfold_setup	****	****
init.py

src.bioemu.hpacker_setup - 58.8%

Name	Line	Branch
src.bioemu.hpacker_setup	58.8%	****
init.py
setup_hpacker.py	58.8%

src.bioemu.openfold.np - 44%

Name	Line	Branch
src.bioemu.openfold.np	44%	****
protein.py	31.2%
residue_constants.py	60.7%

src.bioemu.openfold.utils - 50.1%

Name	Line	Branch
src.bioemu.openfold.utils	50.1%	****
rigid_utils.py	50.1%

[github-actions]

Summary

Summary

Generated on:	05/19/2025 - 09:22:02
Parser:	Cobertura
Assemblies:	5
Classes:	22
Files:	22
Line coverage:	66.2% (1641 of 2477)
Covered lines:	1641
Uncovered lines:	836
Coverable lines:	2477
Total lines:	8214
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 79%

Name	Line	Branch
src.bioemu	79%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	68.9%
denoiser.py	96.8%
get_embeds.py	68.6%
md_utils.py	85.8%
models.py	94.1%
run_hpacker.py	0%
sample.py	44.7%
sde_lib.py	84.3%
seq_io.py	100%
shortcuts.py	100%
sidechain_relax.py	77.4%
so3_sde.py	81%
structure_module.py	99%
utils.py	59.3%

src.bioemu.colabfold_setup -

Name	Line	Branch
src.bioemu.colabfold_setup	****	****
init.py

src.bioemu.hpacker_setup - 58.8%

Name	Line	Branch
src.bioemu.hpacker_setup	58.8%	****
init.py
setup_hpacker.py	58.8%

src.bioemu.openfold.np - 44%

Name	Line	Branch
src.bioemu.openfold.np	44%	****
protein.py	31.2%
residue_constants.py	60.7%

src.bioemu.openfold.utils - 50.1%

Name	Line	Branch
src.bioemu.openfold.utils	50.1%	****
rigid_utils.py	50.1%

[github-actions]

Summary

Summary

Generated on:	05/19/2025 - 09:47:32
Parser:	Cobertura
Assemblies:	5
Classes:	22
Files:	22
Line coverage:	66.2% (1641 of 2477)
Covered lines:	1641
Uncovered lines:	836
Coverable lines:	2477
Total lines:	8214
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 79%

Name	Line	Branch
src.bioemu	79%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	68.9%
denoiser.py	96.8%
get_embeds.py	68.6%
md_utils.py	85.8%
models.py	94.1%
run_hpacker.py	0%
sample.py	44.7%
sde_lib.py	84.3%
seq_io.py	100%
shortcuts.py	100%
sidechain_relax.py	77.4%
so3_sde.py	81%
structure_module.py	99%
utils.py	59.3%

src.bioemu.colabfold_setup -

Name	Line	Branch
src.bioemu.colabfold_setup	****	****
init.py

src.bioemu.hpacker_setup - 58.8%

Name	Line	Branch
src.bioemu.hpacker_setup	58.8%	****
init.py
setup_hpacker.py	58.8%

src.bioemu.openfold.np - 44%

Name	Line	Branch
src.bioemu.openfold.np	44%	****
protein.py	31.2%
residue_constants.py	60.7%

src.bioemu.openfold.utils - 50.1%

Name	Line	Branch
src.bioemu.openfold.utils	50.1%	****
rigid_utils.py	50.1%

[github-actions]

Summary

Summary

Generated on:	05/19/2025 - 10:11:02
Parser:	Cobertura
Assemblies:	5
Classes:	22
Files:	22
Line coverage:	66.2% (1641 of 2477)
Covered lines:	1641
Uncovered lines:	836
Coverable lines:	2477
Total lines:	8214
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 79%

Name	Line	Branch
src.bioemu	79%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	68.9%
denoiser.py	96.8%
get_embeds.py	68.6%
md_utils.py	85.8%
models.py	94.1%
run_hpacker.py	0%
sample.py	44.7%
sde_lib.py	84.3%
seq_io.py	100%
shortcuts.py	100%
sidechain_relax.py	77.4%
so3_sde.py	81%
structure_module.py	99%
utils.py	59.3%

src.bioemu.colabfold_setup -

Name	Line	Branch
src.bioemu.colabfold_setup	****	****
init.py

src.bioemu.hpacker_setup - 58.8%

Name	Line	Branch
src.bioemu.hpacker_setup	58.8%	****
init.py
setup_hpacker.py	58.8%

src.bioemu.openfold.np - 44%

Name	Line	Branch
src.bioemu.openfold.np	44%	****
protein.py	31.2%
residue_constants.py	60.7%

src.bioemu.openfold.utils - 50.1%

Name	Line	Branch
src.bioemu.openfold.utils	50.1%	****
rigid_utils.py	50.1%