Update MODEL_CARD.md

[ryotatomioka]

No description provided.

[github-actions]

Summary

Summary

Generated on:	05/15/2025 - 16:34:00
Parser:	Cobertura
Assemblies:	5
Classes:	22
Files:	22
Line coverage:	66.2% (1639 of 2473)
Covered lines:	1639
Uncovered lines:	834
Coverable lines:	2473
Total lines:	8208
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 79.1%

Name	Line	Branch
src.bioemu	79.1%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	68.9%
denoiser.py	96.8%
get_embeds.py	68.6%
md_utils.py	85.8%
models.py	94.1%
run_hpacker.py	0%
sample.py	44.5%
sde_lib.py	84.3%
seq_io.py	100%
shortcuts.py	100%
sidechain_relax.py	77.4%
so3_sde.py	81%
structure_module.py	99%
utils.py	59.3%

src.bioemu.colabfold_setup -

Name	Line	Branch
src.bioemu.colabfold_setup	****	****
init.py

src.bioemu.hpacker_setup - 58.8%

Name	Line	Branch
src.bioemu.hpacker_setup	58.8%	****
init.py
setup_hpacker.py	58.8%

src.bioemu.openfold.np - 44%

Name	Line	Branch
src.bioemu.openfold.np	44%	****
protein.py	31.2%
residue_constants.py	60.7%

src.bioemu.openfold.utils - 50.1%

Name	Line	Branch
src.bioemu.openfold.utils	50.1%	****
rigid_utils.py	50.1%

[franknoe]

Maybe " that underlies their biological function" instead of ", creating a deeper perspective on their functions"

[ryotatomioka]

Maybe " that underlies their biological function" instead of ", creating a deeper perspective on their functions"

Updated

[github-actions]

Summary

Summary

Generated on:	05/16/2025 - 09:07:21
Parser:	Cobertura
Assemblies:	5
Classes:	22
Files:	22
Line coverage:	66.2% (1639 of 2473)
Covered lines:	1639
Uncovered lines:	834
Coverable lines:	2473
Total lines:	8208
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 79.1%

Name	Line	Branch
src.bioemu	79.1%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	68.9%
denoiser.py	96.8%
get_embeds.py	68.6%
md_utils.py	85.8%
models.py	94.1%
run_hpacker.py	0%
sample.py	44.5%
sde_lib.py	84.3%
seq_io.py	100%
shortcuts.py	100%
sidechain_relax.py	77.4%
so3_sde.py	81%
structure_module.py	99%
utils.py	59.3%

src.bioemu.colabfold_setup -

Name	Line	Branch
src.bioemu.colabfold_setup	****	****
init.py

src.bioemu.hpacker_setup - 58.8%

Name	Line	Branch
src.bioemu.hpacker_setup	58.8%	****
init.py
setup_hpacker.py	58.8%

src.bioemu.openfold.np - 44%

Name	Line	Branch
src.bioemu.openfold.np	44%	****
protein.py	31.2%
residue_constants.py	60.7%

src.bioemu.openfold.utils - 50.1%

Name	Line	Branch
src.bioemu.openfold.utils	50.1%	****
rigid_utils.py	50.1%

[sarahnlewis]

Please check that the model card here and in huggingface are kept in sync. Is there a copy in foundry too?

[github-actions]

Summary

Summary

Generated on:	06/11/2025 - 09:31:08
Parser:	Cobertura
Assemblies:	5
Classes:	22
Files:	22
Line coverage:	66.1% (1643 of 2482)
Covered lines:	1643
Uncovered lines:	839
Coverable lines:	2482
Total lines:	8227
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 78.9%

Name	Line	Branch
src.bioemu	78.9%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	68.9%
denoiser.py	96.8%
get_embeds.py	68.6%
md_utils.py	85.8%
models.py	94.1%
run_hpacker.py	0%
sample.py	44.3%
sde_lib.py	84.3%
seq_io.py	93.9%
shortcuts.py	100%
sidechain_relax.py	77.4%
so3_sde.py	81%
structure_module.py	99%
utils.py	59.3%

src.bioemu.colabfold_setup -

Name	Line	Branch
src.bioemu.colabfold_setup	****	****
init.py

src.bioemu.hpacker_setup - 58.8%

Name	Line	Branch
src.bioemu.hpacker_setup	58.8%	****
init.py
setup_hpacker.py	58.8%

src.bioemu.openfold.np - 44%

Name	Line	Branch
src.bioemu.openfold.np	44%	****
protein.py	31.2%
residue_constants.py	60.7%

src.bioemu.openfold.utils - 50.1%

Name	Line	Branch
src.bioemu.openfold.utils	50.1%	****
rigid_utils.py	50.1%

[github-actions]

Summary

Summary

Generated on:	06/16/2025 - 15:50:13
Parser:	Cobertura
Assemblies:	6
Classes:	25
Files:	25
Line coverage:	69.2% (1819 of 2626)
Covered lines:	1819
Uncovered lines:	807
Coverable lines:	2626
Total lines:	8660
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 81.3%

Name	Line	Branch
src.bioemu	81.3%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	70.3%
denoiser.py	97.7%
get_embeds.py	68.6%
md_utils.py	85.8%
model_utils.py	29.2%
models.py	94.1%
run_hpacker.py	0%
sample.py	50%
sde_lib.py	84.3%
seq_io.py	93.9%
shortcuts.py	100%
sidechain_relax.py	77.4%
so3_sde.py	89.9%
structure_module.py	99%
utils.py	59.3%

src.bioemu.colabfold_setup -

Name	Line	Branch
src.bioemu.colabfold_setup	****	****
init.py

src.bioemu.hpacker_setup - 58.8%

Name	Line	Branch
src.bioemu.hpacker_setup	58.8%	****
init.py
setup_hpacker.py	58.8%

src.bioemu.openfold.np - 44%

Name	Line	Branch
src.bioemu.openfold.np	44%	****
protein.py	31.2%
residue_constants.py	60.7%

src.bioemu.openfold.utils - 50.1%

Name	Line	Branch
src.bioemu.openfold.utils	50.1%	****
rigid_utils.py	50.1%

src.bioemu.training - 100%

Name	Line	Branch
src.bioemu.training	100%	****
foldedness.py	100%
loss.py	100%