[MNT] Switch to using Apptainer command in "How to get data" instructions

[alyssadai]

• Closes Switch to apptainer commands for "How to get data" modal #661

Checklist

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• Tests pass
• Checks pass
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• There is at least one test that would fail under the original bug conditions.

Summary by Sourcery

Switch the “How to get data” instructions and tests to use Apptainer instead of Singularity

Enhancements:

• Replace Singularity with Apptainer for the data retrieval run command in the GetDataDialog component

Tests:

• Update component tests to assert on the apptainer toggle and run command instead of singularity

[sourcery-ai]

Reviewer's guide (collapsed on small PRs)

Reviewer's Guide

Switched the data retrieval instructions from Singularity to Apptainer by updating the component’s command mapping and aligning the corresponding UI and tests.

Class diagram for updated GetDataDialog command mapping

classDiagram
  class GetDataDialog {
    +open: boolean
    +onClose: () => void
    +RUN_COMMANDS: string
    +theme
    +commandType
    +render()
  }
  class CodeBlock {
    +code: string
  }
  GetDataDialog --> CodeBlock

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File-Level Changes

Change	Details	Files
Replaced Singularity with Apptainer in the data retrieval commands	Renamed the RUN_COMMANDS key from 'singularity' to 'apptainer' and updated its command string Modified ToggleButtonGroup to include 'apptainer' instead of 'singularity'	src/components/GetDataDialog.tsx
Updated tests to reflect the Apptainer switch	Changed the test title to reference apptainer Replaced 'singularity' button existence and click assertions with 'apptainer' Updated expected CLI output from 'singularity run' to 'apptainer run'	cypress/component/GetDataDialog.cy.tsx

Assessment against linked issues

Issue	Objective	Addressed	Explanation
#661	Update the tab title in the 'How to get data' modal from 'singularity' to 'apptainer'.	✅
#661	Update the command in the 'How to get data' modal to use 'apptainer' instead of 'singularity'.	✅

Possibly linked issues

• Switch to apptainer commands for "How to get data" modal #661: The PR changes the 'How to get data' instructions from Singularity to Apptainer commands, resolving the issue.
• Switch to apptainer commands for "How to get data" modal #661: PR updates 'how to get data' instructions by switching from Singularity to Apptainer commands, fulfilling an issue subtask.

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[sourcery-ai]

We've reviewed this pull request using the Sourcery rules engine

[rmanaem]

🧑‍🍳

[neurobagel-bot]

🚀 PR was released in v0.13.2 🚀