Description of feature
After decision to drop this feature temporarily #248 and to implement this feature we need to
- Add an optional
variant column in the input samplesheet
- Copy the
epytope module and vcf splitting logic from https://github.com/nf-core/epitopeprediction
- Create a fasta containing mutated protein sequences
- Concat sample-specific fasta with
--fasta input
- Generate decoys
- Give comet the concatenated sample-specific fasta
Additionally, make sure if no vcf is provided, that the decoy database is generated only once