Lange Lab

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9 repositories

RoLiM_Standalone
Public
Python
•0•1•3•0•Updated Mar 22, 2026Mar 22, 2026
PXAudit
Public
Audit PRIDE proteomics study metadata from the command line. Scores each dataset on a 7-tier FAIR ladder and a quantification-readiness axis. Results land in a …
python cli metadata
python cli metadata bioinformatics sqlite proteomics mass-spectrometry pride-database data-quality fair-data
Python
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MIT License
•0•0•3•0•Updated Mar 22, 2026Mar 22, 2026
pxscraper
Public
Automated web scraper to collect and filter pediatric cancer datasets from ProteomeXchange.
proteomics webscraping pediatric-cancer
proteomics webscraping pediatric-cancer proteomexchange
Python
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MIT License
•0•1•1•0•Updated Mar 18, 2026Mar 18, 2026
ProteoForge_Analysis
Public
All the scripts and notebooks used to produce the data written in the manuscript titled "ProteoForge: An Imputation-Aware Framework for Differential Proteoform …
Jupyter Notebook
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Other
•2•2•0•0•Updated Dec 12, 2025Dec 12, 2025
RoLiM
Public
Detection of statistically enriched patterns in sequence data sets.
Python
•0•4•2•27•Updated Dec 23, 2024Dec 23, 2024
Analysis_of_QuEStVar_Manuscript
Public
All the scripts and notebooks used to produce the data written in the manuscript titled "Statistical testing for protein equivalence identifies core functional …
Jupyter Notebook
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MIT License
•2•1•0•0•Updated May 2, 2024May 2, 2024
Library-Filtering
Public
Script to filter spectral libraries from Spectronaut or DiaNN for peptides with fragments that support biotin modification at the peptide N terminus.
Python
•0•1•0•0•Updated Oct 7, 2023Oct 7, 2023
SQuAPP
Public
Shiny App allows streamlined analysis of multiple levels of proteomics data.
shiny data-analysis proteomics
shiny data-analysis proteomics bioinformatics-tool peptidomics interactive-apps
R
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MIT License
•2•7•0•0•Updated May 30, 2023May 30, 2023
Rolim_DE
Public
R
•0•0•0•0•Updated Jun 11, 2021Jun 11, 2021