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    42 repositories

    • data-intuitive.github.io

      Public
      Website
      quarto
      0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

    • anndataR

      Public
      The website for scverse/anndataR
      0•0•0•0•Updated Dec 2, 2025Dec 2, 2025

    • ghcr_cellranger

      Public
      Python
      •0•0•1•1•Updated Nov 21, 2025Nov 21, 2025

    • TileDB-SOMA

      Public
      Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
      Python
      •
      MIT License
      •30•0•0•1•Updated Nov 18, 2025Nov 18, 2025

    • quarto-d2

      Public
      Lua
      •
      GNU Affero General Public License v3.0
      •2•47•4•1•Updated Nov 13, 2025Nov 13, 2025

    • nf-plugin-template

      Public template
      Template project for creating Nextflow plugins (beta)
      Groovy
      •
      Apache License 2.0
      •2•0•0•0•Updated Sep 1, 2025Sep 1, 2025

    • plugins

      Public
      Nextflow plugins index repository
      38•0•0•0•Updated Jun 23, 2025Jun 23, 2025

    • dummy-anndata

      Public
      Generate dummy anndata objects
      Python
      •
      MIT License
      •1•0•0•1•Updated Feb 6, 2025Feb 6, 2025

    • netlify-deploy-site

      Public
      MIT License
      •0•1•1•0•Updated Dec 19, 2024Dec 19, 2024

    • laminr-demo

      Public
      An example analysis to demonstrate laminr
      Apache License 2.0
      •0•1•0•0•Updated Nov 21, 2024Nov 21, 2024

    • .github

      Public
      0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • mermaid-demos-in-quarto

      Public
      R
      •1•2•0•0•Updated Jul 16, 2024Jul 16, 2024

    • reclaim-the-bytes

      Public
      Remove unused software to reclaim disk space.
      MIT License
      •0•3•0•2•Updated Mar 21, 2024Mar 21, 2024

    • VirusBank

      Public
      JavaScript
      •0•1•1•1•Updated Mar 11, 2024Mar 11, 2024

    • clockify

      Public
      R
      •10•0•0•0•Updated Feb 7, 2024Feb 7, 2024

    • LuciusAPI

      Public
      The Lucius REST API based on Spark-Jobserver
      Scala
      •
      Apache License 2.0
      •0•2•0•0•Updated Sep 12, 2023Sep 12, 2023

    • spark-jobserver

      Public
      REST job server for Apache Spark
      Scala
      •
      Other
      •985•1•0•0•Updated Aug 23, 2023Aug 23, 2023

    • setup-nextflow

      Public
      TypeScript
      •
      MIT License
      •4•0•0•0•Updated Jun 30, 2023Jun 30, 2023

    • test-setup-nextflow

      Public
      0•0•0•0•Updated Jun 22, 2023Jun 22, 2023

    • LuciusOperations

      Public
      Shell
      •0•0•0•0•Updated Jun 8, 2023Jun 8, 2023

    • LuciusWeb

      Public
      The web frontend for Lucius
      reactivecyclejswebappl1000web-frontend
      JavaScript
      •
      Apache License 2.0
      •2•1•0•5•Updated Mar 6, 2023Mar 6, 2023

    • LuciusCore

      Public
      The core functionality for Lucius
      Scala
      •
      Apache License 2.0
      •0•1•1•0•Updated Feb 10, 2023Feb 10, 2023

    • ghcr-dotnet-script

      Public
      Docker image containing the latest version of dotnet-script.
      Dockerfile
      •
      MIT License
      •1•0•0•0•Updated Jan 26, 2023Jan 26, 2023

    • registry

      Public
      0•0•0•0•Updated Dec 8, 2022Dec 8, 2022

    • ghcr_randpy

      Public
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Jun 1, 2022Jun 1, 2022

    • viash_docs

      Public
      Documentation website of viash
      HTML
      •0•4•0•0•Updated May 31, 2021May 31, 2021

    • more_viash_examples

      Public
      R
      •
      Other
      •0•0•0•0•Updated Feb 12, 2021Feb 12, 2021

    • viash_tutorial_1

      Public
      Shell
      •
      Other
      •0•1•0•0•Updated Feb 5, 2021Feb 5, 2021

    • diflow

      Public archive
      A NextFlow DSL2 abstraction layer for declarative composable components.
      HTML
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Dec 14, 2020Dec 14, 2020

    • pySCENIC

      Public
      pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
      Python
      •
      GNU General Public License v3.0
      •198•0•0•0•Updated Oct 20, 2020Oct 20, 2020