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@pathoplexus

Pathoplexus

An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.

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  1. pathoplexus pathoplexus Public

    An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.

    MDX 48 6

  2. curation_reports curation_reports Public

    Curation reports for Pathoplexus

    4

  3. example_data example_data Public

    Example data for users to try out Pathoplexus

    3

  4. loculus_deployments loculus_deployments Public

    Gitops definitions for Pathoplexus' Loculus deployments

    1

  5. notifications notifications Public

    Notifications for Pathoplexus submissions

    Python 1

  6. silo-lineage-hierarchy-definitions silo-lineage-hierarchy-definitions Public

    Repository to keep SILO lineage hierarchy definition files

    Python 1 1

Repositories

Showing 10 of 10 repositories
  • pathoplexus Public

    An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.

    pathoplexus/pathoplexus’s past year of commit activity
    MDX 48 AGPL-3.0 6 84 8 Updated Jan 19, 2026
  • notifications Public

    Notifications for Pathoplexus submissions

    pathoplexus/notifications’s past year of commit activity
    Python 1 AGPL-3.0 0 1 0 Updated Jan 19, 2026
  • loculus_deployments Public

    Gitops definitions for Pathoplexus' Loculus deployments

    pathoplexus/loculus_deployments’s past year of commit activity
    1 0 2 0 Updated Jan 15, 2026
  • ena-submission Public

    This repo should be used for uploading sequences that have been approved for release to ENA

    pathoplexus/ena-submission’s past year of commit activity
    Python 0 0 8 0 Updated Jan 9, 2026
  • announcement_banners Public
    pathoplexus/announcement_banners’s past year of commit activity
    0 0 0 0 Updated Jan 7, 2026
  • silo-lineage-hierarchy-definitions Public

    Repository to keep SILO lineage hierarchy definition files

    pathoplexus/silo-lineage-hierarchy-definitions’s past year of commit activity
    Python 1 AGPL-3.0 1 0 1 Updated Dec 11, 2025
  • example_data Public

    Example data for users to try out Pathoplexus

    pathoplexus/example_data’s past year of commit activity
    3 0 0 1 Updated Dec 3, 2025
  • curation_data Public
    pathoplexus/curation_data’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 4, 2025
  • curation_reports Public

    Curation reports for Pathoplexus

    pathoplexus/curation_reports’s past year of commit activity
    4 0 7 (1 issue needs help) 0 Updated Feb 19, 2025
  • dev_example_data Public
    pathoplexus/dev_example_data’s past year of commit activity
    0 1 0 2 Updated Feb 18, 2025

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