Upgrade PDFBox to 3.0.5 and fix checksums in tika tests

[cwperks]

Description

This PR completes the Tika major version bump in opensearch-project#19125

We had some tests compare checksums against known checksums after using tika to parse various file formats. With a major version bump, tika changed some parsing logic and our checksums needed to be updated accordingly.

To compute new checksums use Tika CLI:

1. brew install tika
2. unzip the test file
3. tika --text plugins/ingest-attachment/src/test/resources/org/opensearch/ingest/attachment/test/tika-files/testHTMLNoisyMetaEncoding_3.html | sha1sum

I only faced issues with one file using Tika CLI (EmbeddedOutlook.docx) and copied the output that we computed in the tests. Everything else I was able to verify with Tika CLI v3.2.2.

Check List

• Functionality includes testing.
• API changes companion pull request created, if applicable.
• Public documentation issue/PR created, if applicable.

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[prudhvigodithi]

This is the issue with using existing running gradle daemon, if we kill the running gradle daemon and re-run the test we dont see this error.

[cwperks]

I got this issue on my Mac

REPRODUCE WITH: ./gradlew ':plugins:ingest-attachment:test' --tests 'org.opensearch.ingest.attachment.TikaDocTests.testParseSamples' -Dtests.seed=C7D4F7839B0F2D24 -Dtests.security.manager=true -Dtests.jvm.argline="-XX:TieredStopAtLevel=1 -XX:ReservedCodeCacheSize=64m" -Dtests.locale=ff-Latn-GN -Dtests.timezone=Africa/Bangui -Druntime.java=24
  2> java.lang.SecurityException: Denied OPEN (read) access to file: /System/Library/Fonts/Supplemental/Times New Roman.ttf, domain: ProtectionDomain  (file:/Users/cwperx/Projects/opensearch/OpenSearch/plugins/ingest-attachment/build/classes/java/main/ <no signer certificates>)
     jdk.internal.loader.ClassLoaders$AppClassLoader@659e0bfd
     <no principals>
     java.security.Permissions@1ce6dd3e (
    )
        at __randomizedtesting.SeedInfo.seed([C7D4F7839B0F2D24:EE9EC5F216DB847]:0)
        at java.base/java.nio.channels.FileChannel.open(FileChannel.java:347)
        at org.apache.pdfbox.io.RandomAccessReadBufferedFile.<init>(RandomAccessReadBufferedFile.java:110)
        at org.apache.pdfbox.io.RandomAccessReadBufferedFile.<init>(RandomAccessReadBufferedFile.java:98)
        at org.apache.pdfbox.pdmodel.font.FileSystemFontProvider$FSFontInfo.readTrueTypeFont(FileSystemFontProvider.java:249)
        at org.apache.pdfbox.pdmodel.font.FileSystemFontProvider$FSFontInfo.getTrueTypeFont(FileSystemFontProvider.java:206)
        at org.apache.pdfbox.pdmodel.font.FileSystemFontProvider$FSFontInfo.getFont(FileSystemFontProvider.java:148)
        at org.apache.pdfbox.pdmodel.font.FontMapperImpl.findFont(FontMapperImpl.java:433)
        at org.apache.pdfbox.pdmodel.font.FontMapperImpl.getTrueTypeFont(FontMapperImpl.java:318)
        at org.apache.pdfbox.pdmodel.font.PDTrueTypeFont.<init>(PDTrueTypeFont.java:142)
        at org.apache.pdfbox.pdmodel.font.PDFontFactory.createFont(PDFontFactory.java:153)
        at org.apache.pdfbox.pdmodel.PDResources.getFont(PDResources.java:170)
        at org.apache.pdfbox.contentstream.operator.text.SetFontAndSize.process(SetFontAndSize.java:72)
        at org.apache.pdfbox.contentstream.PDFStreamEngine.processOperator(PDFStreamEngine.java:924)
        at org.apache.pdfbox.contentstream.PDFStreamEngine.processStreamOperators(PDFStreamEngine.java:557)
        at org.apache.pdfbox.contentstream.PDFStreamEngine.processStream(PDFStreamEngine.java:515)
        at org.apache.pdfbox.contentstream.PDFStreamEngine.processPage(PDFStreamEngine.java:158)
        at org.apache.pdfbox.text.LegacyPDFStreamEngine.processPage(LegacyPDFStreamEngine.java:153)
        at org.apache.pdfbox.text.PDFTextStripper.processPage(PDFTextStripper.java:379)
        at org.apache.tika.parser.pdf.PDF2XHTML.processPage(PDF2XHTML.java:136)
        at org.apache.tika.parser.pdf.AbstractPDF2XHTML.processPages(AbstractPDF2XHTML.java:1362)
        at org.apache.pdfbox.text.PDFTextStripper.writeText(PDFTextStripper.java:252)
        at org.apache.tika.parser.pdf.PDF2XHTML.process(PDF2XHTML.java:107)
        at org.apache.tika.parser.pdf.PDFParser.parse(PDFParser.java:219)
        at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:298)
        at org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:204)
        at org.apache.tika.Tika.parseToString(Tika.java:525)
        at org.opensearch.ingest.attachment.TikaImpl.lambda$parse$0(TikaImpl.java:122)
        at java.base/java.security.AccessController.doPrivileged(AccessController.java:337)
        at org.opensearch.ingest.attachment.TikaImpl.parse(TikaImpl.java:121)
        at org.opensearch.ingest.attachment.TikaDocTests.tryParse(TikaDocTests.java:96)
        at org.opensearch.ingest.attachment.TikaDocTests.testParseSamples(TikaDocTests.java:68)

[cwperks]

The issue is present when processing this one:

doc: /Users/cwperx/Projects/opensearch/OpenSearch/plugins/ingest-attachment/build/testrun/test/temp/org.opensearch.ingest.attachment.TikaDocTests_A83431F6C648EB64-001/tempDir-002/headers.mbox