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Manage dependencies with UV#22

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giuliabriss wants to merge 3 commits intos175573:masterfrom
giuliabriss:uv
Open

Manage dependencies with UV#22
giuliabriss wants to merge 3 commits intos175573:masterfrom
giuliabriss:uv

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- Add detailed uv installation and usage instructions to README
- Update all GIANA.py references to GIANA4.1.py (correct filename)
- Add note about multiple GIANA versions available
- Create comprehensive .gitignore for Python/bioinformatics project
- Include uv-specific ignores and common data file patterns
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