pysynthbio is an Python package that provides a convenient interface to the Synthesize Bio API, allowing users to generate realistic gene expression data based on specified biological conditions. This package enables researchers to easily access AI-generated transcriptomic data for various modalities including bulk RNA-seq and single-cell RNA-seq.
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Create a Synthesize Bio account and generate an API Key.
pip install pysynthbio
import pysynthbio
# Set your API token (or use environment variable SYNTHESIZE_API_KEY)
pysynthbio.set_synthesize_token(use_keyring=True)
# Get an example query for the bulk RNA-seq baseline model
query = pysynthbio.get_example_query(model_id="gem-1-bulk")["example_query"]
# Generate synthetic expression data
result = pysynthbio.predict_query(query, model_id="gem-1-bulk")
# Access the results
metadata = result["metadata"]
expression = result["expression"]Get Started | Full Documentation
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